Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30076.m004591 |
Family | GH28 |
Protein Properties | Length: 537 Molecular Weight: 59044.1 Isoelectric Point: 5.5779 |
Chromosome | Chromosome/Scaffold: 30076 Start: 1008326 End: 1010537 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 166 | 493 | 0 |
ETACSQNDTAIILVPYTFKFMIQSTIFNGPCQGGIVFQVDGTIMPPDGPESWPQKNSKRQWLVFYRINELSLLGGGTIDGRGEKWWDLPCKPHKGINGTT LPGPCDSPIAIRFFMSSNLTVQGIRIKNSPQFNFRFDNCRNVHIDSIHITAPALSPNTDGIHIENTNNVEIYDSVISNGDDCVSIGSGCYDVDIRNITCG PSHGISIGSLGNHNSRACVSNITVRDSVIKLSDNGVRIKTWQGGSGAVTGITFSNIHMDNVKNPIIIDQFYCLTKECSNQTSAVFVSDILYENIKGTYNI RSPPMHFACSDSVPCTNLTLSEVELLPA |
Full Sequence |
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Protein Sequence Length: 537 Download |
MGFSRLPYFV FCTSFIFFFL CTQARWHHHQ HHHHHTKHKH SHYHHRVSTI SAPPENANPP 60 YDPPENANPP YAPPENANTP YAPSEPADPP SFPPEETNLH SPPKFANPPS SPPKSSNLPS 120 SPSPEPASPP DDDGNDYNSG VLDVRKFGAI GDGITDDTDA FKMAWETACS QNDTAIILVP 180 YTFKFMIQST IFNGPCQGGI VFQVDGTIMP PDGPESWPQK NSKRQWLVFY RINELSLLGG 240 GTIDGRGEKW WDLPCKPHKG INGTTLPGPC DSPIAIRFFM SSNLTVQGIR IKNSPQFNFR 300 FDNCRNVHID SIHITAPALS PNTDGIHIEN TNNVEIYDSV ISNGDDCVSI GSGCYDVDIR 360 NITCGPSHGI SIGSLGNHNS RACVSNITVR DSVIKLSDNG VRIKTWQGGS GAVTGITFSN 420 IHMDNVKNPI IIDQFYCLTK ECSNQTSAVF VSDILYENIK GTYNIRSPPM HFACSDSVPC 480 TNLTLSEVEL LPAQGDLVLD PFCWNAYGEL ETLTIPPVSC LMEGTPSSLL NNDIDYC 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-71 | 164 | 521 | 364 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-72 | 164 | 517 | 358 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-90 | 169 | 490 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-92 | 162 | 490 | 332 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-112 | 162 | 517 | 358 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-26 | 204 | 494 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-26 | 204 | 494 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-26 | 204 | 494 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-26 | 204 | 494 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-26 | 204 | 494 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |