Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30125.m001255 |
Family | CBM43 |
Protein Properties | Length: 263 Molecular Weight: 27584.4 Isoelectric Point: 4.1464 |
Chromosome | Chromosome/Scaffold: 30125 Start: 795971 End: 796848 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 177 | 258 | 2.8e-33 |
WCVAKPSVPDPIIQEAMNYACGSGADCDSLQPSGPCFEPNTLFAHASYAFNSYWQRTKVAGGTCSFGGTAMLVTVDPSYDGC |
Full Sequence |
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Protein Sequence Length: 263 Download |
MDPSNTDPYV SSPFTLPPYD SLSPIPLPEN APPYCIYPPN TPQPPSTTNP TPTGGSPSPP 60 FYYLPPILPL PSPPPGPTTA VPSPPKTVPI PNPPQIVPSP PETIPSPTIY FPSPPGPTLS 120 PPYFGPSPPS YIPSPPSFVP SPTGFVPSPT VFLPPIVYPP PIAPPPPPSK GAPQALWCVA 180 KPSVPDPIIQ EAMNYACGSG ADCDSLQPSG PCFEPNTLFA HASYAFNSYW QRTKVAGGTC 240 SFGGTAMLVT VDPSYDGCHF VYN |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 3.0e-22 | 176 | 247 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-39 | 176 | 260 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN78496.1 | 0 | 1 | 263 | 62 | 262 | hypothetical protein [Vitis vinifera] |
EMBL | CBI34142.1 | 0 | 1 | 263 | 53 | 253 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002264966.1 | 0 | 4 | 262 | 66 | 367 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312230.1 | 0 | 1 | 254 | 1 | 292 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516415.1 | 0 | 1 | 263 | 1 | 263 | conserved hypothetical protein [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 1e-20 | 177 | 260 | 13 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR029881 | 88 | 175 | 262 | 0 |
GR029880 | 88 | 175 | 262 | 0 |
CK297659 | 89 | 175 | 263 | 0 |
CF373123 | 93 | 172 | 263 | 0 |
CF604722 | 93 | 170 | 262 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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