Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30128.m008960 |
Family | GH28 |
Protein Properties | Length: 470 Molecular Weight: 51101.1 Isoelectric Point: 6.6785 |
Chromosome | Chromosome/Scaffold: 30128 Start: 1874106 End: 1876249 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 99 | 438 | 0 |
DSACSQNESSILLAPSRYSFLIQPTIFTGPCKSNLVFQIDGTIMPPDGPKSWPRNMSKRQWLVFYRISGMSVQGGGVIDGRGEKWWNLPCKPHKGFNGAT SAGPCDSPVALRFFMSSNLTVQGLKVKNSPQFHFRFDNCQNVHIEMLNIKAPALSPNTDGIHIENTNDVHIHNSVVSNGDDCVSIGAGCHNVDIRNITCG PSHGISIGSLGIHNSRACVSNITVTDSVIKYSDNGVRIKTWQGGYGSVSKVAFHNIHMDTVRNPIIIDQYYCLTKNCSNQTSAVYISDISYTDIKGTYDV RSPPLHLACSDSVPCSNLILSEIELLPAKGQFLANPFCWN |
Full Sequence |
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Protein Sequence Length: 470 Download |
MTLSVIFMLS FFIFFTSIEG RYFHIFSKIS IPPVATPASS PSALSQVPSP SYITSFPSPV 60 PEPEPEPEAS PGRVFNVLSF GAVGDGASDD TQAFKMAWDS ACSQNESSIL LAPSRYSFLI 120 QPTIFTGPCK SNLVFQIDGT IMPPDGPKSW PRNMSKRQWL VFYRISGMSV QGGGVIDGRG 180 EKWWNLPCKP HKGFNGATSA GPCDSPVALR FFMSSNLTVQ GLKVKNSPQF HFRFDNCQNV 240 HIEMLNIKAP ALSPNTDGIH IENTNDVHIH NSVVSNGDDC VSIGAGCHNV DIRNITCGPS 300 HGISIGSLGI HNSRACVSNI TVTDSVIKYS DNGVRIKTWQ GGYGSVSKVA FHNIHMDTVR 360 NPIIIDQYYC LTKNCSNQTS AVYISDISYT DIKGTYDVRS PPLHLACSDS VPCSNLILSE 420 IELLPAKGQF LANPFCWNAY GAMETLNIPP VSCLLEGIPP FAAQTIVDQC |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-82 | 72 | 429 | 361 | + polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-85 | 75 | 450 | 382 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-93 | 102 | 423 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-102 | 76 | 423 | 351 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-125 | 73 | 450 | 380 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 74 | 470 | 88 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 1 | 470 | 8 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318932.1 | 0 | 1 | 469 | 1 | 471 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330008.1 | 0 | 72 | 461 | 19 | 408 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 1 | 470 | 1 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-26 | 168 | 427 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-26 | 168 | 427 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-26 | 168 | 427 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-26 | 168 | 427 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-26 | 168 | 427 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |