| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 30131.m006851 |
| Family | GT9 |
| Protein Properties | Length: 466 Molecular Weight: 51587.9 Isoelectric Point: 6.5907 |
| Chromosome | Chromosome/Scaffold: 30131 Start: 11392 End: 13867 |
| Description | NDH-dependent cyclic electron flow 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT9 | 196 | 428 | 7.5e-21 |
| ILKNRYYDMVLSTKLAGLGHASFLFMTSARDRVSYIHPNVNAAGAGLLLSETFTPDITNLAEGGYHMYHQMLDWLGRPFRSVPRHTVPPLRVSISRKLKE FVEAKYRAAGAEKGKYIVIHGIESDSKASMQSRGDTDSLLPLQVWAEIAKDIRAFKPVFVIPHEKERENVEEIVGDDTSIVMITTPGQLAALINDSAGVI ATNTAAIQLANAREKPSIALFGSIEKGRLFIPN | |||
| Full Sequence |
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| Protein Sequence Length: 466 Download |
| MASTSLLPKI TPFLTNPSSL SSTHFTKPSF LNPLSPDHHS ACARKPTTTT VLHANKKNPW 60 LDPFDDGEDP EMEYGSLFAD GKQEEDPRPP DNPNNPYGFL KFPKGYSVEI ASLPLKIRGD 120 VRRCCCVISG GVYENLLFFP AIQLIKDRYP GVQIDVLASP RGKQTYELNK NVRWANDYDP 180 DDDWPEPAEY VDMLGILKNR YYDMVLSTKL AGLGHASFLF MTSARDRVSY IHPNVNAAGA 240 GLLLSETFTP DITNLAEGGY HMYHQMLDWL GRPFRSVPRH TVPPLRVSIS RKLKEFVEAK 300 YRAAGAEKGK YIVIHGIESD SKASMQSRGD TDSLLPLQVW AEIAKDIRAF KPVFVIPHEK 360 ERENVEEIVG DDTSIVMITT PGQLAALIND SAGVIATNTA AIQLANAREK PSIALFGSIE 420 KGRLFIPNAE EKKCSIVSSK TGKLKDIDVG DVKQAMQILD LSLALA |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| cd03789 | GT1_LPS_heptosyltransferase | 0.0004 | 336 | 418 | 89 | + Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| TIGR02193 | heptsyl_trn_I | 0.0002 | 284 | 423 | 146 | + lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. |
| cd03789 | GT1_LPS_heptosyltransferase | 7.0e-5 | 136 | 230 | 96 | + Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| TIGR02201 | heptsyl_trn_III | 5.0e-5 | 136 | 417 | 307 | + lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. |
| COG0859 | RfaF | 2.0e-22 | 125 | 455 | 346 | + ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] |
| Gene Ontology | |
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| GO Term | Description |
| GO:0008152 | metabolic process |
| GO:0016757 | transferase activity, transferring glycosyl groups |
| Hydropathy |
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| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Malus domestica | MDP0000821000 | ||||
| Oryza sativa | LOC_Os08g17390.1 | ||||
| Panicum virgatum | Pavirv00029492m | Pavirv00049966m | |||
| Setaria italica | Si013672m | ||||
| Sorghum bicolor | Sb07g016320.2 | Sb07g016320.1 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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