| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 30131.m007255 |
| Family | AA7 |
| Protein Properties | Length: 530 Molecular Weight: 59792.5 Isoelectric Point: 8.663 |
| Chromosome | Chromosome/Scaffold: 30131 Start: 2494428 End: 2496604 |
| Description | cytokinin oxidase/dehydrogenase 6 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 65 | 261 | 1.7e-23 |
| GNRFQLLPFAVLHPRSVSDIATTIKHIWQMGPHSDLTVAARGHGHSLHGQAQAHRGVVINMESLQGPKMQVHAGKHPYVDVSGGELWINILRESLKHGLA PKSWTDYLHLTVGGTLSNAGVSGQAFRHGPQISNVHQLEVITGTGEVVNCSEKQNGDLFHGVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFN | |||
| Full Sequence |
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| Protein Sequence Length: 530 Download |
| MRFLPISSHK LNNMLFIRGF MILLLSCMTV RINLCFSGNP SSLKTLSVQG HFTFDDLHYA 60 AKDFGNRFQL LPFAVLHPRS VSDIATTIKH IWQMGPHSDL TVAARGHGHS LHGQAQAHRG 120 VVINMESLQG PKMQVHAGKH PYVDVSGGEL WINILRESLK HGLAPKSWTD YLHLTVGGTL 180 SNAGVSGQAF RHGPQISNVH QLEVITGTGE VVNCSEKQNG DLFHGVLGGL GQFGIITRAR 240 ISLEPAPDMV KWIRVLYSDF NTFARDQESL ISAENTFDYI EGFVIINRTG LLNNWRSSFN 300 PQDPLQASQF ESDGRTLFCL ELAKYFKKDK TDKLNEEIMN LLSQLRYIPS TLFLSEVPYI 360 EFLDRVHVSE VKLRSKGLWE VPHPWLNLLV PKSKIHNFAE EVFGNILTDT SNGPILIYPV 420 NKSKWDNRTS VVIPEEDIFY LVAFLSSAVP SSTGTDGLKH ILTQNRRILE FCDTARLGFK 480 QYLPHYTSQE EWKAHFGPQW KVFAQRKSAY DPLAILAPGQ RIFQKAIPFS 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR01678 | FAD_lactone_ox | 5.0e-6 | 175 | 250 | 76 | + sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1. | ||
| pfam01565 | FAD_binding_4 | 4.0e-23 | 72 | 215 | 145 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| COG0277 | GlcD | 3.0e-23 | 65 | 520 | 465 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam09265 | Cytokin-bind | 2.0e-151 | 247 | 523 | 281 | + Cytokinin dehydrogenase 1, FAD and cytokinin binding. Members of this family adopt an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. They are predominantly found in plant cytokinin dehydrogenase 1, where they are capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin. | ||
| PLN02441 | PLN02441 | 0 | 10 | 530 | 530 | + cytokinin dehydrogenase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0009690 | cytokinin metabolic process |
| GO:0016491 | oxidoreductase activity |
| GO:0019139 | cytokinin dehydrogenase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI28611.1 | 0 | 1 | 529 | 31 | 558 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002270841.1 | 0 | 1 | 529 | 1 | 528 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002304773.1 | 0 | 14 | 530 | 1 | 517 | cytokinin oxidase [Populus trichocarpa] |
| RefSeq | XP_002332424.1 | 0 | 1 | 530 | 1 | 530 | cytokinin oxidase [Populus trichocarpa] |
| RefSeq | XP_002513118.1 | 0 | 1 | 530 | 1 | 530 | Cytokinin dehydrogenase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2q4w_A | 0 | 44 | 527 | 32 | 524 | A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification |
| PDB | 2exr_A | 0 | 44 | 527 | 32 | 524 | A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 |
| PDB | 3s1d_A | 0 | 40 | 524 | 17 | 516 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
| PDB | 3s1c_A | 0 | 40 | 524 | 17 | 516 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
| PDB | 3dq0_A | 0 | 40 | 524 | 17 | 516 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES837714 | 290 | 163 | 452 | 0 |
| DV137371 | 271 | 204 | 474 | 0 |
| DY963441 | 302 | 50 | 349 | 0 |
| JK618028 | 275 | 69 | 343 | 0 |
| FE674332 | 303 | 185 | 487 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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