| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 30137.m000440 |
| Family | GH28 |
| Protein Properties | Length: 480 Molecular Weight: 52794.3 Isoelectric Point: 7.4802 |
| Chromosome | Chromosome/Scaffold: 30137 Start: 248124 End: 252088 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 108 | 452 | 0 |
| AEKGGSQLIVPRGRWLTGSFNLTSNFTLFLEEGAVILGSQDPKEWPIIEPLPSYGRGRERLGGRHISLIHGNGLTNVIITGNNGSIDGQGKMWWELWWNR TLEHTRGHLVELMNSHNILISNLTFRNSPFWTIHPVYCSNVVVKDMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGIKTARPSS HIIVRRVSGTTPTCSGVGIGSEMSGGIFNVMIQDLHIWDSAAGVRIKTDIGRGGYISNITLHNITMERVKIPIRFSRGSNDHPDERWDPNAIPVVKGVSI SNVICVNSTKAPVLQGIKDAPFGGICMKNVTLVGLASSTSWHCEF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 480 Download |
| MESSSALMGK LTRLSWSPLI LLITVLVLLS IQITTRDFYP ICLMSRSSSQ PPGFSGDKES 60 CAVFFLGELL LPRREVVRSI VDFGGVGDGK TSNTETFRKA VRYMQRFAEK GGSQLIVPRG 120 RWLTGSFNLT SNFTLFLEEG AVILGSQDPK EWPIIEPLPS YGRGRERLGG RHISLIHGNG 180 LTNVIITGNN GSIDGQGKMW WELWWNRTLE HTRGHLVELM NSHNILISNL TFRNSPFWTI 240 HPVYCSNVVV KDMTILAPLN APNTDGIDPD SSTNVCIEDC YIESGDDLVA VKSGWDQYGI 300 KTARPSSHII VRRVSGTTPT CSGVGIGSEM SGGIFNVMIQ DLHIWDSAAG VRIKTDIGRG 360 GYISNITLHN ITMERVKIPI RFSRGSNDHP DERWDPNAIP VVKGVSISNV ICVNSTKAPV 420 LQGIKDAPFG GICMKNVTLV GLASSTSWHC EFVSGFANEV FPMPCPQLQN NDSSSWCSYS 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-20 | 72 | 380 | 326 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-26 | 80 | 411 | 345 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-26 | 79 | 441 | 382 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-30 | 176 | 453 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-59 | 79 | 437 | 391 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI37530.1 | 0 | 53 | 477 | 55 | 476 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002274138.1 | 0 | 53 | 477 | 55 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002307030.1 | 0 | 79 | 469 | 2 | 392 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002310517.1 | 0 | 44 | 480 | 3 | 437 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526639.1 | 0 | 1 | 480 | 1 | 480 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4.06377e-44 | 71 | 446 | 23 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4.06377e-44 | 71 | 446 | 23 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4.06377e-44 | 71 | 446 | 23 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4.06377e-44 | 71 | 446 | 23 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 5e-21 | 122 | 454 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
