Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30147.m014076 |
Family | PL1 |
Protein Properties | Length: 433 Molecular Weight: 48208.5 Isoelectric Point: 8.1409 |
Chromosome | Chromosome/Scaffold: 30147 Start: 4360646 End: 4362307 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 156 | 354 | 0 |
ITFAGDMVITLSQELIINSNKTIDGRGANVHISCGAQITIQYARNIIIHGIHIHDIRGGSGGKIRDSETHFGKRTASDGDGISIYGSNNIWIDHVSISNC TDGLIDAIMASTAITISNCHFTRHNTVMLLGGNNKFSADSVMQVTVAFNHFDRKLVQRMPRVRYGLAHVVNNDYTSWEMYAIGGSEHPTIISQGNRFLA |
Full Sequence |
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Protein Sequence Length: 433 Download |
METVKYIKLL VIAFATIIPT LKANIAHFDK VWQQRAKEAS HAALQAYHPN PEDIVNHFNK 60 EVAKSLNDFS STSSQLSQHK RPCHATNPID RCWRCDANWA SNRKKLAGCA LGFGRMTTGG 120 KDGDYYVVTD PSDDDLVNPR EGTLRYGVIQ DRPLWITFAG DMVITLSQEL IINSNKTIDG 180 RGANVHISCG AQITIQYARN IIIHGIHIHD IRGGSGGKIR DSETHFGKRT ASDGDGISIY 240 GSNNIWIDHV SISNCTDGLI DAIMASTAIT ISNCHFTRHN TVMLLGGNNK FSADSVMQVT 300 VAFNHFDRKL VQRMPRVRYG LAHVVNNDYT SWEMYAIGGS EHPTIISQGN RFLAPPDPDC 360 KQVTKRNVEP ESEWKSWNWR SEGDLMLNGA FFVESGSPIE THGKEEVHAM PGTLVHRLTR 420 YAGALHCKKQ KPC |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 2.0e-14 | 24 | 68 | 45 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 2.0e-25 | 117 | 352 | 248 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-57 | 168 | 352 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-68 | 161 | 356 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 16 | 433 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 16 | 433 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002330086.1 | 0 | 1 | 433 | 1 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511525.1 | 0 | 1 | 433 | 1 | 433 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002520133.1 | 0 | 1 | 433 | 4 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 87 | 425 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 87 | 425 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-20 | 156 | 354 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000003 | 170 | 365 | 128 | 343 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.000000000002 | 168 | 367 | 74 | 298 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778688 | 407 | 34 | 433 | 0 |
FG606120 | 361 | 49 | 409 | 0 |
GT740031 | 301 | 98 | 397 | 0 |
GR456774 | 270 | 126 | 395 | 0 |
CK262438 | 300 | 97 | 396 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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