Basic Information | |
---|---|
Species | Ricinus communis |
Cazyme ID | 30169.m006623 |
Family | GH28 |
Protein Properties | Length: 473 Molecular Weight: 51833.4 Isoelectric Point: 9.0343 |
Chromosome | Chromosome/Scaffold: 30169 Start: 2101269 End: 2103268 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 85 | 432 | 0 |
DGGAQLIIPAGKWLTGSFNLTSHFTLFLHKEAVLLASQDEAEWPILPPLPSYGRGRDATGGRFSSLIFGTNLKDVVITGNNGTIDGQGATWWNKFHKGLL NQTRPYLIELLYSHKIQISNLILINSPSWNVHPTYSSNVLIQGLTILAPVDSPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDQYGIKFGMPTKKL VIRRLTCISPDSATIALGSEMSGGIQDVRAEDITAINTQSGIRIKTAAGRGAYVKDIFVRRMNFKTMKYVFWMTGSYGSHPDKGYDPNALPIITRINYRD IVAENVTYSARLEGIEKDPFTGICISNANITLTKKPEKLQWNCTDIEG |
Full Sequence |
---|
Protein Sequence Length: 473 Download |
MENYPTSAKH YIFKVIPVVL ILGSLGSRLG ECRNVKISNT ISYSAISCRK HSAVLTDFGG 60 VGDGKTSNTK VFQTAIANLS KYSPDGGAQL IIPAGKWLTG SFNLTSHFTL FLHKEAVLLA 120 SQDEAEWPIL PPLPSYGRGR DATGGRFSSL IFGTNLKDVV ITGNNGTIDG QGATWWNKFH 180 KGLLNQTRPY LIELLYSHKI QISNLILINS PSWNVHPTYS SNVLIQGLTI LAPVDSPNTD 240 GINPDSCTNT RIEDCYIVSG DDCIAVKSGW DQYGIKFGMP TKKLVIRRLT CISPDSATIA 300 LGSEMSGGIQ DVRAEDITAI NTQSGIRIKT AAGRGAYVKD IFVRRMNFKT MKYVFWMTGS 360 YGSHPDKGYD PNALPIITRI NYRDIVAENV TYSARLEGIE KDPFTGICIS NANITLTKKP 420 EKLQWNCTDI EGVTSNVNPR PCSLLPGKRL ECPFPKDRLP IENVKLKTCS AAS 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 3.0e-17 | 54 | 442 | 414 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-24 | 33 | 414 | 402 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 2.0e-26 | 55 | 439 | 399 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-27 | 154 | 430 | 297 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 9.0e-55 | 53 | 345 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 20 | 450 | 1 | 446 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 20 | 450 | 1 | 446 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 20 | 450 | 1 | 446 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 20 | 450 | 1 | 446 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.0000000000001 | 47 | 391 | 151 | 528 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
Sequence Alignments (This image is cropped. Click for full image.) |
---|