| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 30170.m014103 |
| Family | AA7 |
| Protein Properties | Length: 540 Molecular Weight: 60367.6 Isoelectric Point: 7.0032 |
| Chromosome | Chromosome/Scaffold: 30170 Start: 2852062 End: 2857905 |
| Description | cytokinin oxidase 5 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 57 | 258 | 1e-27 |
| SQPMAVFHPASAQDIARLVRAAYNSAHGFTVSARGHGHSINGQAQTRINGVVIEMSGSDSRRSQLGLRKPASPKVSAKEMHVDVWGGELWIDVLKSTLEY GLAPKSWTDYLYLSVGGTLSNAGISGQAFNHGPQISNVHELDVVTGKGEILTCSDQQNSELFHAVLGGLGQFGIITRARIALEPAPQRVRWIRVLYSSFS SF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 540 Download |
| MATNKLLLTF AICRLIITVG LTVDPAELLR LGVDGRLSVD PSDVEMASLD FGLLSRSQPM 60 AVFHPASAQD IARLVRAAYN SAHGFTVSAR GHGHSINGQA QTRINGVVIE MSGSDSRRSQ 120 LGLRKPASPK VSAKEMHVDV WGGELWIDVL KSTLEYGLAP KSWTDYLYLS VGGTLSNAGI 180 SGQAFNHGPQ ISNVHELDVV TGKGEILTCS DQQNSELFHA VLGGLGQFGI ITRARIALEP 240 APQRVRWIRV LYSSFSSFTR DQEYLISLQG NSAAQKFDYV EGFVIVDEGL INNWRSSFFS 300 PRNPVKISSI GANGGVLYCL EVTKNYDDST VDTIDQEIEW LLKKLNFIPS SVFTTDLPYV 360 DFLDRVHKAE LKLRSKGLWD VPHPWLNLFV PKSRIADFDK GVFKGILGNK TSGPILIYPM 420 NRNKWEQRSS AVTPDEEVFY LVALLRSALD NGEETQTLEY LSNQNRQILR FCDDAGIKVK 480 QYLPHYTSEE EWVDHFGDKW SKFYHNKMEF DPRRILATGQ RIFMPSFPRS SPSTTMASSF 540 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11230 | PRK11230 | 1.0e-6 | 56 | 257 | 217 | + glycolate oxidase subunit GlcD; Provisional | ||
| COG0277 | GlcD | 2.0e-22 | 34 | 261 | 234 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 3.0e-23 | 59 | 210 | 153 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| pfam09265 | Cytokin-bind | 1.0e-162 | 242 | 523 | 284 | + Cytokinin dehydrogenase 1, FAD and cytokinin binding. Members of this family adopt an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. They are predominantly found in plant cytokinin dehydrogenase 1, where they are capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin. | ||
| PLN02441 | PLN02441 | 0 | 1 | 530 | 533 | + cytokinin dehydrogenase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0009690 | cytokinin metabolic process |
| GO:0016491 | oxidoreductase activity |
| GO:0019139 | cytokinin dehydrogenase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s1d_A | 0 | 25 | 523 | 17 | 515 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
| PDB | 3s1c_A | 0 | 25 | 523 | 17 | 515 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
| PDB | 3dq0_A | 0 | 25 | 523 | 17 | 515 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
| PDB | 3c0p_A | 0 | 25 | 523 | 17 | 515 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
| PDB | 3bw7_A | 0 | 25 | 523 | 17 | 515 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
