Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30190.m010823 |
Family | GH28 |
Protein Properties | Length: 446 Molecular Weight: 48481.1 Isoelectric Point: 7.8271 |
Chromosome | Chromosome/Scaffold: 30190 Start: 3557534 End: 3561515 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 420 | 0 |
RRGGTLLYIPPGVFLTGSFNLTSHMTLYLARGAVIKATQDTWNWPLIAPLPSYGRGRERLGGRYMSFIHGDGLHDVVITGENGTIDGQGDIWWNMWRQRT LQFTRPNLVEFLNSRGIIISNVIFQNSPFWNIHPVYCSNVVIRFVTILAPHDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSSH ITIRRITGSSPFAGIAVGSETSGGVEHVLAENINLYDMGVGLHVKTNIGRGGFIRNITFSDVYMKNARKGIKIAGDVGDHPDDNYNPNALPVVKGIIFRG VWGENVLQPGAIQGLKSSPFTGICLSNINLHGVPGPRSTPWKCSDVSG |
Full Sequence |
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Protein Sequence Length: 446 Download |
MSPSSLLPLS LCFSILMIYS TVAHGVETCS GIVPMRYRND KISIADFGGV GDGKTVNTKA 60 FRAAIYRIQH LKRRGGTLLY IPPGVFLTGS FNLTSHMTLY LARGAVIKAT QDTWNWPLIA 120 PLPSYGRGRE RLGGRYMSFI HGDGLHDVVI TGENGTIDGQ GDIWWNMWRQ RTLQFTRPNL 180 VEFLNSRGII ISNVIFQNSP FWNIHPVYCS NVVIRFVTIL APHDSPNTDG IDPDSSSNVC 240 IEDSYISTGD DLVAVKSGWD EYGIAYGRPS SHITIRRITG SSPFAGIAVG SETSGGVEHV 300 LAENINLYDM GVGLHVKTNI GRGGFIRNIT FSDVYMKNAR KGIKIAGDVG DHPDDNYNPN 360 ALPVVKGIIF RGVWGENVLQ PGAIQGLKSS PFTGICLSNI NLHGVPGPRS TPWKCSDVSG 420 AALEVSPFPC SELATTHQTG SCSDHI |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 7.0e-23 | 47 | 418 | 395 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 5.0e-25 | 39 | 435 | 417 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-28 | 42 | 404 | 381 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-34 | 78 | 418 | 354 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 5.0e-56 | 17 | 408 | 433 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 11 | 443 | 9 | 441 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 11 | 446 | 10 | 447 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 11 | 443 | 9 | 441 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 35 | 445 | 1 | 411 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 1 | 446 | 1 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.99965e-42 | 17 | 404 | 1 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.99965e-42 | 17 | 404 | 1 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.99965e-42 | 17 | 404 | 1 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.99965e-42 | 17 | 404 | 1 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 7e-20 | 85 | 381 | 51 | 351 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |