| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 30190.m011264 |
| Family | GH28 |
| Protein Properties | Length: 480 Molecular Weight: 52533.5 Isoelectric Point: 4.8105 |
| Chromosome | Chromosome/Scaffold: 30190 Start: 2905517 End: 2908266 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 87 | 431 | 0 |
| GSQLYVPPGKWLTGSFNLTSHFTLFLDKDAVLLASQDESEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGANGTIDGQGDLWWKKFHNGEINY TRPYLIEIMYSNNIQISNLTLMNSPSWNIHPTYSSNVVVQGITILAPVNSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGISFGMPTKQLVI RRLTCISPTSAAIALGSEMSGGIQDVRAEDITCINTESGVRIKTSVGRGGYVKDIYVRKMTMHTMKWVFWMTGNYGSHPDNNYDPNAIPVIENINYRDIV AENVTMAARLEGIAGDPFTGICISNVTIGLAQKPKKLQWNCTDIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 480 Download |
| MELSTSPKTS LVMDTILVVG LLLCLCTNGV DSRKRPKLAC FEYAAISCRA HEASLEDFGG 60 VGDGQTSNTK AFQAAIDHLS QFSYDGGSQL YVPPGKWLTG SFNLTSHFTL FLDKDAVLLA 120 SQDESEWPVI EPLPSYGRGR DTEGGRYSSL IFGTNLTDVV ITGANGTIDG QGDLWWKKFH 180 NGEINYTRPY LIEIMYSNNI QISNLTLMNS PSWNIHPTYS SNVVVQGITI LAPVNSPNTD 240 GINPDSCTNT RIEDCYIVSG DDCVAVKSGW DEYGISFGMP TKQLVIRRLT CISPTSAAIA 300 LGSEMSGGIQ DVRAEDITCI NTESGVRIKT SVGRGGYVKD IYVRKMTMHT MKWVFWMTGN 360 YGSHPDNNYD PNAIPVIENI NYRDIVAENV TMAARLEGIA GDPFTGICIS NVTIGLAQKP 420 KKLQWNCTDI AGISSGVTPK PCSLLPEQEK EKIADCNFPE DSLPIENIEV KMCSSSRKYL 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 5.0e-22 | 57 | 442 | 411 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-25 | 54 | 443 | 409 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 6.0e-26 | 58 | 352 | 306 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-28 | 151 | 430 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-61 | 52 | 348 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002278930.1 | 0 | 1 | 480 | 1 | 480 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299511.1 | 0 | 1 | 479 | 1 | 479 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301370.1 | 0 | 29 | 480 | 19 | 470 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002303605.1 | 0 | 1 | 475 | 1 | 466 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 1 | 480 | 1 | 480 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 51 | 418 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 51 | 418 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 51 | 418 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 51 | 418 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 4e-17 | 69 | 388 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
