Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30204.m001796 |
Family | PL1 |
Protein Properties | Length: 441 Molecular Weight: 48670.9 Isoelectric Point: 7.9145 |
Chromosome | Chromosome/Scaffold: 30204 Start: 432493 End: 436804 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 155 | 360 | 0 |
IQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDAISIFGSSHIWVD HNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYTRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQ GNRYLA |
Full Sequence |
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Protein Sequence Length: 441 Download |
MAVPYSLRRL CICTLIILLL FVTVNASTEL NSRLGEKTHF QSSDNSTMAD GSGGAWNEHA 60 VEDPEDIASM VDESIRNSTA RRNLGFFSCV TGNPIDDCWR CDPHWQLHRK RLANCGIGFG 120 RNAVGGRDGR YYVVTDSGDD DPVNPKPGTL RHAVIQDRPL WIVFKRDMVI TLKQELIMNS 180 FKTIDARGTN VHIANGACIT IQFVTNIIIH GLHIHDCKPT GNAMVRSSPT HYGWRTMADG 240 DAISIFGSSH IWVDHNSLSN CADGLIDAIM GSTAITISNN YFTHHNEVML LGHSDSYTRD 300 KLMQVTIAYN HFGEGLIQRM PRCRHGYFHV VNNDYTHWEM YAIGGSASPT INSQGNRYLA 360 PNNAFAKEVT KRVETSNNVW KHWNWRSEGD LLLNGAYFTP SGAGAAASYA RASSLGAKSS 420 SMVGAITSTA GALVCRRGRQ C |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 9.0e-26 | 180 | 356 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-69 | 173 | 358 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-79 | 167 | 362 | 207 | + Amb_all domain. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 93 | 434 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 93 | 434 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-17 | 162 | 360 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000007 | 241 | 358 | 190 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.0000000000001 | 183 | 432 | 90 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |