Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30418.m000015 |
Family | GT4 |
Protein Properties | Length: 333 Molecular Weight: 36474.6 Isoelectric Point: 6.6206 |
Chromosome | Chromosome/Scaffold: 30418 Start: 251 End: 1252 |
Description | sulfoquinovosyldiacylglycerol 2 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT4 | 148 | 301 | 1.3e-39 |
EILFVGRLVEKKGVCYAIMAMPQILKMRPHAKLIIVGDGPDKPSLEQLAVTMGLADHVQFIGAVDNNHLPEFYRRATVFVGPSIVTKQGDQEGLGLVFAE ALGSECPVVASDLPAISDVVIDGVTGLICKQKDEADLALKVIMLLNSAALRNEL |
Full Sequence |
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Protein Sequence Length: 333 Download |
MQTLAYNGGI MASLKQSPLR YGLVPFFVLA QLIAVIKVLR ATRIDVIHAH WLIPQGGIAL 60 LGRYLAFRSP YIVCTSHGGD LFGLQQSFLQ SIKCSIIKKV DRLTVVSQAM RDYASALADR 120 TEIDVVSMGV DLTNTFIPES QIERCTDEIL FVGRLVEKKG VCYAIMAMPQ ILKMRPHAKL 180 IIVGDGPDKP SLEQLAVTMG LADHVQFIGA VDNNHLPEFY RRATVFVGPS IVTKQGDQEG 240 LGLVFAEALG SECPVVASDL PAISDVVIDG VTGLICKQKD EADLALKVIM LLNSAALRNE 300 LAEAGRAHVL ERFDWAVVAE RYREIIEKTC QSP |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd03808 | GT1_cap1E_like | 2.0e-50 | 19 | 324 | 318 | + This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. | ||
cd05844 | GT1_like_7 | 2.0e-54 | 3 | 321 | 331 | + Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
cd03799 | GT1_amsK_like | 5.0e-63 | 26 | 314 | 292 | + This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor. | ||
cd03801 | GT1_YqgM_like | 5.0e-72 | 17 | 327 | 326 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
cd03798 | GT1_wlbH_like | 2.0e-78 | 18 | 328 | 320 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002537769.1 | 0 | 1 | 333 | 1 | 333 | glycosyltransferase, putative [Ricinus communis] |
RefSeq | YP_002029551.1 | 0 | 1 | 333 | 77 | 406 | glycosyl transferase group 1 [Stenotrophomonas maltophilia R551-3] |
RefSeq | YP_462322.1 | 0 | 2 | 332 | 72 | 404 | glycosyltransferase [Syntrophus aciditrophicus SB] |
RefSeq | ZP_01128384.1 | 0 | 1 | 327 | 91 | 417 | Glycosyltransferase [Nitrococcus mobilis Nb-231] |
RefSeq | ZP_01289672.1 | 0 | 2 | 326 | 17 | 341 | Glycosyl transferase, group 1 [delta proteobacterium MLMS-1] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3oka_B | 5e-20 | 34 | 327 | 77 | 377 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
PDB | 3oka_A | 5e-20 | 34 | 327 | 77 | 377 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
PDB | 3okp_A | 7e-20 | 34 | 327 | 77 | 377 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
PDB | 3okc_A | 7e-20 | 34 | 327 | 77 | 377 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' Bound To Gdp (Orthorhombic Crystal Form) |
PDB | 2jjm_L | 2e-19 | 25 | 325 | 81 | 381 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FG601503 | 195 | 2 | 193 | 0 |
FC369785 | 179 | 146 | 323 | 5e-18 |
FC364372 | 179 | 146 | 323 | 1e-16 |
BJ608460 | 179 | 146 | 323 | 1e-16 |
CO364415 | 234 | 104 | 324 | 8e-16 |
Sequence Alignments (This image is cropped. Click for full image.) |
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