| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 312200 |
| Family | CBM53 |
| Protein Properties | Length: 1021 Molecular Weight: 115673 Isoelectric Point: 6.6618 |
| Chromosome | Chromosome/Scaffold: 1 Start: 4710538 End: 4714849 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM53 | 300 | 401 | 5.7e-29 |
| DTVKLYYNKRSGPLANSKELWLHGGFNNWVDGLSIVVKLVDAELKDDDPKSGNDDSKSGNWWFAEVVVPAGALVIDWVFADGPPKGAVLYDNNFYQDFHA LV | |||
| CBM53 | 125 | 208 | 1.6e-29 |
| EDIEVFLNRNLSTLKNEPDVLIMGAFNEWRWKSFTRRLEKTWIHGNWLSCLLHIPKEAYKMDFVFFNGQSVYDNNDSKDFCVEI | |||
| CBM53 | 474 | 562 | 1.6e-32 |
| NPVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMEAADDGSSHMKTTAKVPLDAYMMDFVFSEKEDGGIFDNKNGLDYHLPV | |||
| GT5 | 573 | 1016 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIIFPKYDCLKHNFVKDLQFNRSYHWGGTEIKVWHGKVEGLSVYFLDPQNGLFQRGCVYGCADD AGRFGFFCHAALEFLLQGGFHPDILHCHDWSSAPVSWLFKDQYTNYGLIKTRVVFTIHNLEFGANAIGKAMKFADKATTVSPTYAKEVAGNSVISPHLYK FHGIINGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEELQNRLGLKSADLPVVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFV NLANQLHSSHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGAVPVVRKTGGLFDTVFDVDHDKERAQAQVLEPNGFSFDGADAPGV DYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYLELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1021 Download |
| MAASGPKSSG PRGFGRQPTV GSAQKRTQKK NGEKDSNATS TATNEVSGVT KLPEAKADVQ 60 KQGSVVFNER NVLDKSDIED DALLERKLKL ERENLRRKEI EALAAEHLAR GDRMFVYPVI 120 VKPDEDIEVF LNRNLSTLKN EPDVLIMGAF NEWRWKSFTR RLEKTWIHGN WLSCLLHIPK 180 EAYKMDFVFF NGQSVYDNND SKDFCVEIKG GMDKVDFENF LLKEKLREQE KLAKEEAERE 240 RQKEEKRRIE AQKAAIEADR AQAKAETQKR RELLQPAIKK AVISAENVWY IEPSDFKAED 300 TVKLYYNKRS GPLANSKELW LHGGFNNWVD GLSIVVKLVD AELKDDDPKS GNDDSKSGNW 360 WFAEVVVPAG ALVIDWVFAD GPPKGAVLYD NNFYQDFHAL VPRKTPEELY WLEEENMIFR 420 KLQEERRLKE EVMRAKMEKT ARLKAETKER TLKKFLLSQK DVVYTEPVEI QAGNPVTVLY 480 NPANTVLNGK PEVWFRGSFN RWTHRLGPLP PQKMEAADDG SSHMKTTAKV PLDAYMMDFV 540 FSEKEDGGIF DNKNGLDYHL PVVGGISKEP PLHIVHIAVE MAPIAKVGGL GDVVTSLSRA 600 VQELNHNVDI IFPKYDCLKH NFVKDLQFNR SYHWGGTEIK VWHGKVEGLS VYFLDPQNGL 660 FQRGCVYGCA DDAGRFGFFC HAALEFLLQG GFHPDILHCH DWSSAPVSWL FKDQYTNYGL 720 IKTRVVFTIH NLEFGANAIG KAMKFADKAT TVSPTYAKEV AGNSVISPHL YKFHGIINGI 780 DPDIWDPYND NFIPVPYTSE NVVEGKRAAK EELQNRLGLK SADLPVVGII TRLTHQKGIH 840 LIKHAIWRTL ERNGQVVLLG SAPDPRIQND FVNLANQLHS SHGDRARLVL TYDEPLSHLI 900 YAGADFILVP SIFEPCGLTQ LIAMRYGAVP VVRKTGGLFD TVFDVDHDKE RAQAQVLEPN 960 GFSFDGADAP GVDYALNRAI SAWYDGREWF NSLCKTVMEQ DWSWNRPALE YLELYHSARK 1020 * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 1.0e-148 | 572 | 1018 | 493 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 6.0e-160 | 572 | 1018 | 490 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 8.0e-173 | 572 | 1020 | 488 | + glycogen synthase; Provisional | ||
| PLN02316 | PLN02316 | 0 | 1 | 1020 | 1049 | + synthase/transferase | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 573 | 1017 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABB46391.1 | 0 | 1 | 1020 | 1 | 1025 | soluble starch synthase III [Arabidopsis thaliana] |
| EMBL | CAA64173.1 | 0 | 81 | 1020 | 303 | 1228 | soluble-starch-synthase [Solanum tuberosum] |
| RefSeq | NP_172637.1 | 0 | 1 | 1020 | 1 | 1025 | ATSS3 (starch synthase 3); starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002305571.1 | 0 | 1 | 1020 | 1 | 1017 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518476.1 | 0 | 1 | 1020 | 1 | 1058 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 572 | 1016 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 572 | 1016 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 572 | 1016 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 572 | 1016 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 572 | 1016 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO794758 | 572 | 450 | 1020 | 0 |
| HO778003 | 708 | 100 | 807 | 0 |
| HO778003 | 142 | 434 | 568 | 0.006 |
| HO794758 | 111 | 108 | 214 | 0.008 |
| HO794758 | 122 | 279 | 398 | 0.13 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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