y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 312221 |
Family | PL1 |
Protein Properties | Length: 384 Molecular Weight: 42662.5 Isoelectric Point: 9.4548 |
Chromosome | Chromosome/Scaffold: 1 Start: 4783206 End: 4784619 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 95 | 303 | 0 |
AVIQSKPLWITFARDMVIVLRNELIMNSYKTIDGRGAKVEIAYGPCITIQHVSHVIIHGISIHDCKPGKSGRVRSSPTHVGSRKGSDGDAIAIFDSSHIW IDHCYFSRCQDGLIDVLHASTAVTISNNYFTQHDKVMLLGHNDNNVEDKNMRVTIAFNHFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSADPTIF SEGNYFVAS |
Full Sequence |
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Protein Sequence Length: 384 Download |
MASLFLTLSL LFAAFSSFIV EAAYGNGYTI PKLLLNPIDS CWRRNPSWAF NRRSLADCAV 60 GFGKSAVGGK YGSIYVVTNP SDDPENPRPG TLRHAVIQSK PLWITFARDM VIVLRNELIM 120 NSYKTIDGRG AKVEIAYGPC ITIQHVSHVI IHGISIHDCK PGKSGRVRSS PTHVGSRKGS 180 DGDAIAIFDS SHIWIDHCYF SRCQDGLIDV LHASTAVTIS NNYFTQHDKV MLLGHNDNNV 240 EDKNMRVTIA FNHFGPGLIE RMPRVRRGYA HVANNRYEKW QMYAIGGSAD PTIFSEGNYF 300 VASDDPSKKQ VTKRIDSGYD WRRWKWRTSK DVFKNGAYFV PSGYGTVTPL YGRAEWFPVS 360 HGSLVPSLTS SAGPLHCYSG RIC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-27 | 183 | 363 | 193 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-58 | 117 | 300 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-73 | 109 | 304 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172656.1 | 0 | 1 | 383 | 1 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_193939.1 | 0 | 3 | 383 | 2 | 393 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_193940.1 | 0 | 1 | 383 | 10 | 393 | pectate lyase family protein [Arabidopsis thaliana] |
Swiss-Prot | O65388 | 0 | 1 | 383 | 1 | 390 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
RefSeq | XP_002518442.1 | 0 | 32 | 383 | 40 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 36 | 373 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 36 | 373 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-18 | 111 | 302 | 29 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 2e-17 | 90 | 300 | 109 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 0.00000000000002 | 61 | 316 | 22 | 305 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |