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Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 315485 |
Family | PL4 |
Protein Properties | Length: 646 Molecular Weight: 74147.9 Isoelectric Point: 9.5992 |
Chromosome | Chromosome/Scaffold: 2 Start: 8448459 End: 8450428 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 50 | 627 | 0 |
TREVIVDNGIISVSFSSPQGLITGIKYKGVNNVLSPHQRARGYWDITWQGEKTRGGIDRIEGTKFRIITQNQEQVEISFSRTWESGSGSHIIPLNVDKRY IIRTNSSGLYAYGIFERLPEWPEVEMGQVRMVFKLDQDKFHYMAVADDIQREMPTDNDRDIHRGHAKALGYKEAVQLIHPHNSMFKDQVDDKYQYSCEIK DIKVHGWISTKSHVGFWIISSSGEYRFGGPMKQELTSHVGPTAIASFISGHYVGTDMDTRYKSGEAWKKVLGPIFIYLNSGDELLWEDAKRQSKEEVKAW PYDFVAFSDFPSRRERGTVTGRLLVNDGFLTPGRFAYVGLAPPGEAGSWQTNTKGYQFWTKTNETGYFKIDNVRPGTYNLYGWVHGLIGDFLYQNLPPRN GPTLWEIGVPDRTAREYFVPEPYKNTMNPLYLNHTDKFRQYGLWQRYTELYPNHDLIYTIGVSKYSQDWFYAQVTRNNGDSTYTPTTWQIVFHLPYVNMR GSYTLQLALASAARANLQVRFNNEYTRPFFSTGYIGRDNAIARHGIHGLYRLYSINVPGRLLRTGTNTIYLRQSKASG |
Full Sequence |
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Protein Sequence Length: 646 Download |
MISKKKITSL IICSFLLLLL PIAFSRPTRN LDGTSPRAPT VQQIRNRHGT REVIVDNGII 60 SVSFSSPQGL ITGIKYKGVN NVLSPHQRAR GYWDITWQGE KTRGGIDRIE GTKFRIITQN 120 QEQVEISFSR TWESGSGSHI IPLNVDKRYI IRTNSSGLYA YGIFERLPEW PEVEMGQVRM 180 VFKLDQDKFH YMAVADDIQR EMPTDNDRDI HRGHAKALGY KEAVQLIHPH NSMFKDQVDD 240 KYQYSCEIKD IKVHGWISTK SHVGFWIISS SGEYRFGGPM KQELTSHVGP TAIASFISGH 300 YVGTDMDTRY KSGEAWKKVL GPIFIYLNSG DELLWEDAKR QSKEEVKAWP YDFVAFSDFP 360 SRRERGTVTG RLLVNDGFLT PGRFAYVGLA PPGEAGSWQT NTKGYQFWTK TNETGYFKID 420 NVRPGTYNLY GWVHGLIGDF LYQNLPPRNG PTLWEIGVPD RTAREYFVPE PYKNTMNPLY 480 LNHTDKFRQY GLWQRYTELY PNHDLIYTIG VSKYSQDWFY AQVTRNNGDS TYTPTTWQIV 540 FHLPYVNMRG SYTLQLALAS AARANLQVRF NNEYTRPFFS TGYIGRDNAI ARHGIHGLYR 600 LYSINVPGRL LRTGTNTIYL RQSKASGPFE GLMYDYIRLE EPSRV* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 7.0e-28 | 364 | 440 | 77 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-50 | 454 | 640 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-66 | 51 | 331 | 287 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-86 | 35 | 238 | 206 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS99719.1 | 0 | 22 | 644 | 38 | 676 | At2g22620 [Arabidopsis thaliana] |
DDBJ | BAD94618.1 | 0 | 161 | 645 | 2 | 510 | LG127/30 like gene [Arabidopsis thaliana] |
EMBL | CAB37543.1 | 0 | 1 | 645 | 1 | 649 | LG127/30 like gene [Arabidopsis thaliana] |
RefSeq | NP_179847.1 | 0 | 33 | 644 | 44 | 676 | lyase [Arabidopsis thaliana] |
RefSeq | NP_195516.2 | 0 | 1 | 645 | 1 | 667 | lyase [Arabidopsis thaliana] |