| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 316266 |
| Family | GT4 |
| Protein Properties | Length: 496 Molecular Weight: 56000.1 Isoelectric Point: 7.6798 |
| Chromosome | Chromosome/Scaffold: 2 Start: 15711813 End: 15714692 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT4 | 301 | 439 | 9.3e-23 |
| MGVSGRLVRDKGHPLLYEAFALLVKMHPQVYLLVAGSGPWGKRYAELGENVRVLGALKPEELSGFYNALDVFVNPTLRPQGLDLTIIEAMQCVKPVVVPN YPSIVGTVVVDERFGYTFSPNVRSLVETLDSVVRDGSIV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 496 Download |
| MAFKNHSSRT MFSSSSTSFS FRFTTIITLA IFIFCSSYYI LFSRLDCSPV TSSPGNPPFA 60 GDLRDLTSPW NKLSLGPISE KLKLAVFCKS WPVGSIPGGM ERHAYTLYTS LASRGHEIHV 120 FTVSSDRSNR EEYYNRGDLH VYFAPNEHGT LNHSQAFEIF HKINGLDHPF DYVHTESVSL 180 PHWRVKMVPN GDIAVTWHGI WYEIMHSNLF QELSNDRPIS DLQQTMPRLV DEIRFFPKYK 240 QHICISNSAR EVLVNIYQLP KRNVHVIVNG VDQTKFVYSP ESGARFRVKH GVPDNGTFIV 300 MGVSGRLVRD KGHPLLYEAF ALLVKMHPQV YLLVAGSGPW GKRYAELGEN VRVLGALKPE 360 ELSGFYNALD VFVNPTLRPQ GLDLTIIEAM QCVKPVVVPN YPSIVGTVVV DERFGYTFSP 420 NVRSLVETLD SVVRDGSIVL EMKGIACKVY ALSMFTATRM ASAYERFFMC MKNERLLYSG 480 NYLLLSDGED QDLQD* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03811 | GT1_WabH_like | 4.0e-31 | 98 | 416 | 328 | + This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. | ||
| COG0438 | RfaG | 8.0e-32 | 83 | 475 | 408 | + Glycosyltransferase [Cell envelope biogenesis, outer membrane] | ||
| cd03807 | GT1_WbnK_like | 2.0e-33 | 97 | 468 | 395 | + This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. | ||
| cd03798 | GT1_wlbH_like | 1.0e-41 | 98 | 468 | 402 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
| cd03801 | GT1_YqgM_like | 3.0e-64 | 83 | 468 | 395 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3oka_B | 0.00000004 | 269 | 398 | 170 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
| PDB | 3oka_A | 0.00000004 | 269 | 398 | 170 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
| PDB | 3okp_A | 0.00000004 | 269 | 398 | 170 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
| PDB | 3okc_A | 0.00000004 | 269 | 398 | 170 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' Bound To Gdp (Orthorhombic Crystal Form) |
| PDB | 2gek_A | 0.00002 | 96 | 400 | 33 | 314 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' Bound To Gdp (Orthorhombic Crystal Form) |
