Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 316947 |
Family | GH28 |
Protein Properties | Length: 375 Molecular Weight: 40116.6 Isoelectric Point: 6.5679 |
Chromosome | Chromosome/Scaffold: 2 Start: 19141870 End: 19144399 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 24 | 363 | 0 |
ACKGSSKMGSVNVPAGKVFLLNSLHFTGPCIPKPLLFIIDGEMIAQSDPKKWENGENGVIPWLIFDQVDGLAIVGRGLLDGQGKSWWDIHCRDHAGPNCI WLAPTMMTFSNCGNVTLKSLRFRNSAQTHVLVMGSQNVYINDIKVTSPEASPNTDGIHITSSTVVSINHSDIATGDDCVSIGDQVNNLNVTFMNCGPGHG DSIGSLGRGGTEVAVENIRVWHVNFTGTTNGARIKTWPGGTGYVRGIEFFDIHFSSVQNPIIIDQFYGCAPKCVETRKGVHIEKVRYMKMSGTSATKVAM KLECSGESVPCSNLLMRDIDLSPADGIGSVSSLCSFVHGS |
Full Sequence |
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Protein Sequence Length: 375 Download |
MKYGAVGDGI ADDTSAFQKA WEDACKGSSK MGSVNVPAGK VFLLNSLHFT GPCIPKPLLF 60 IIDGEMIAQS DPKKWENGEN GVIPWLIFDQ VDGLAIVGRG LLDGQGKSWW DIHCRDHAGP 120 NCIWLAPTMM TFSNCGNVTL KSLRFRNSAQ THVLVMGSQN VYINDIKVTS PEASPNTDGI 180 HITSSTVVSI NHSDIATGDD CVSIGDQVNN LNVTFMNCGP GHGDSIGSLG RGGTEVAVEN 240 IRVWHVNFTG TTNGARIKTW PGGTGYVRGI EFFDIHFSSV QNPIIIDQFY GCAPKCVETR 300 KGVHIEKVRY MKMSGTSATK VAMKLECSGE SVPCSNLLMR DIDLSPADGI GSVSSLCSFV 360 HGSAQGLIRP SSCL* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam00295 | Glyco_hydro_28 | 2.0e-77 | 27 | 364 | 338 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02218 | PLN02218 | 8.0e-83 | 3 | 344 | 346 | + polygalacturonase ADPG |
PLN03010 | PLN03010 | 2.0e-85 | 1 | 364 | 365 | + polygalacturonase |
PLN03003 | PLN03003 | 1.0e-85 | 2 | 374 | 378 | + Probable polygalacturonase At3g15720 |
PLN02793 | PLN02793 | 7.0e-94 | 3 | 374 | 375 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55472.1 | 0 | 1 | 374 | 1 | 381 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
EMBL | CBI15273.1 | 0 | 2 | 371 | 30 | 384 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36307.1 | 0 | 1 | 374 | 35 | 402 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_178131.1 | 0 | 31 | 374 | 1 | 336 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002267182.1 | 0 | 2 | 371 | 30 | 390 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 14 | 290 | 26 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 4e-18 | 31 | 345 | 23 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-18 | 31 | 345 | 23 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-18 | 31 | 345 | 23 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-18 | 31 | 345 | 23 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT769246 | 261 | 122 | 371 | 0 |
DW479564 | 317 | 5 | 316 | 0 |
DT746124 | 248 | 135 | 371 | 0 |
DR050772 | 298 | 57 | 344 | 0 |
DV135481 | 291 | 7 | 290 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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