| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 317500 |
| Family | GH14 |
| Protein Properties | Length: 454 Molecular Weight: 50642.3 Isoelectric Point: 7.6662 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2560774 End: 2562313 |
| Description | beta-amylase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 98 | 200 | 5.4e-25 |
| SNTVNHTKAIAAGLKALKLLGVEGVDLPIFWGVAETESPGNNQWSGYLAIAEMVKKTGFKLHVSLCFHGSKQPGLSLPDWVTHRSGSQYKDCLSFAVDDV HVL | |||
| GH14 | 202 | 436 | 0 |
| DGELRYPSHQTRKLSDGAGEFQCYDKYMLVALKYMLWGLSGPHDAPSYDQRPNSAPFFSDGGSWESEYGDFFLAWYSSLLVSHADRVLSLASSVFSGTGL PLCGKLPLLHQWHKLRSRPSESTAGFYCNGDNDRYEAVAETFAKNSCRMILPGMDLSDEYQSPKSLSSPESLLAHIKTCCKKHGVVVSGQNSSEPNLGGF EKIKENLKDENAAIDLFTYQRMGALFFSPDHFHAF | |||
| Full Sequence |
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| Protein Sequence Length: 454 Download |
| MEVSVIGNPQ GRICRVELAE RVNRFCIGSE FISINARTHV SFYGETRRRN EINLCFSQCS 60 IRCEAVVSDK SPLLKSTPRR TRSRKIIRCA SFGYSFRSNT VNHTKAIAAG LKALKLLGVE 120 GVDLPIFWGV AETESPGNNQ WSGYLAIAEM VKKTGFKLHV SLCFHGSKQP GLSLPDWVTH 180 RSGSQYKDCL SFAVDDVHVL DDGELRYPSH QTRKLSDGAG EFQCYDKYML VALKYMLWGL 240 SGPHDAPSYD QRPNSAPFFS DGGSWESEYG DFFLAWYSSL LVSHADRVLS LASSVFSGTG 300 LPLCGKLPLL HQWHKLRSRP SESTAGFYCN GDNDRYEAVA ETFAKNSCRM ILPGMDLSDE 360 YQSPKSLSSP ESLLAHIKTC CKKHGVVVSG QNSSEPNLGG FEKIKENLKD ENAAIDLFTY 420 QRMGALFFSP DHFHAFTEFV RNLSQFKQPE DDL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02801 | PLN02801 | 9.0e-43 | 119 | 443 | 400 | + beta-amylase | ||
| PLN02905 | PLN02905 | 3.0e-44 | 119 | 443 | 396 | + beta-amylase | ||
| PLN02161 | PLN02161 | 5.0e-50 | 119 | 444 | 398 | + beta-amylase | ||
| PLN00197 | PLN00197 | 5.0e-52 | 98 | 450 | 427 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 1.0e-63 | 119 | 445 | 396 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK85300.1 | 0 | 1 | 452 | 1 | 511 | AF402598_1 putative beta-amylase BMY3 [Arabidopsis thaliana] |
| EMBL | CAI39245.1 | 0 | 1 | 453 | 1 | 511 | beta-amylase [Glycine max] |
| EMBL | CAN66037.1 | 0 | 1 | 453 | 1 | 515 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_197368.1 | 0 | 1 | 452 | 1 | 510 | BMY3; beta-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
| RefSeq | XP_002312750.1 | 0 | 99 | 453 | 19 | 432 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1b1y_A | 9.99967e-42 | 98 | 393 | 20 | 376 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
| PDB | 1fa2_A | 9.99967e-42 | 99 | 443 | 28 | 443 | A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato |
| PDB | 1v3i_A | 2e-40 | 67 | 443 | 2 | 441 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| PDB | 1q6d_A | 4.00001e-40 | 67 | 443 | 2 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
| PDB | 1q6g_A | 4.00001e-40 | 67 | 443 | 2 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FY438232 | 254 | 202 | 447 | 0 |
| FY431251 | 245 | 210 | 447 | 0 |
| HO781436 | 379 | 132 | 453 | 0 |
| EX130723 | 288 | 177 | 421 | 0 |
| HO781436 | 100 | 43 | 137 | 2.1 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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