y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 317589 |
Family | CBM43 |
Protein Properties | Length: 461 Molecular Weight: 50719.9 Isoelectric Point: 8.9767 |
Chromosome | Chromosome/Scaffold: 3 Start: 3086762 End: 3088333 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 371 | 454 | 1.4e-28 |
WCVVAKGANWTQLGDALSYACSQGNNTCDPIQRGGPCHKPDLTVLHASYAFSSYWAQFRKTGGTCSFNGLATQTIKDPSYGRCE | |||
GH17 | 25 | 345 | 0 |
GVNYGQLGNNLPSPADSVNLIKSLNAKRVKLYDANPKILTALNGTDITVSVMVPNELIVNISKSESLSDDWIRSNILPFYPTTKIRYLLVGNEILSFPDS ELKSSLVPAMRKIQRSLKSLGVKKVKVGTTLAVDVLQSSFPPSSGEFRSDISGLVMKPMLQFLNRTKSFLFVDVYPYFAWAQDPTHVDLDYAIFESSNVT VTDPVTNLTYHNLFDQMIDAFVFAMKRLGYPDLRIWVAETGWPNNGDYDQIGANIYNAATYNRNVVKKLAADPPVGTPARPGKVLPAFVFALYNENQKTG PGTERHFGLLHPNGTQVYGID |
Full Sequence |
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Protein Sequence Length: 461 Download |
MRLLHLLALS LLISVSGAKF SGRPGVNYGQ LGNNLPSPAD SVNLIKSLNA KRVKLYDANP 60 KILTALNGTD ITVSVMVPNE LIVNISKSES LSDDWIRSNI LPFYPTTKIR YLLVGNEILS 120 FPDSELKSSL VPAMRKIQRS LKSLGVKKVK VGTTLAVDVL QSSFPPSSGE FRSDISGLVM 180 KPMLQFLNRT KSFLFVDVYP YFAWAQDPTH VDLDYAIFES SNVTVTDPVT NLTYHNLFDQ 240 MIDAFVFAMK RLGYPDLRIW VAETGWPNNG DYDQIGANIY NAATYNRNVV KKLAADPPVG 300 TPARPGKVLP AFVFALYNEN QKTGPGTERH FGLLHPNGTQ VYGIDLSGKT TEYKESLPAP 360 ENNEFYKGKI WCVVAKGANW TQLGDALSYA CSQGNNTCDP IQRGGPCHKP DLTVLHASYA 420 FSSYWAQFRK TGGTCSFNGL ATQTIKDPSY GRCEFPSVTL * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 7.0e-20 | 371 | 442 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 8.0e-36 | 371 | 455 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-106 | 25 | 345 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF20214.1 | 0 | 13 | 460 | 14 | 440 | AC012395_1 putative beta-1,3-glucanase precursor [Arabidopsis thaliana] |
GenBank | AAM65039.1 | 0 | 13 | 460 | 14 | 460 | putative glucan endo-1-3-beta-glucosidase [Arabidopsis thaliana] |
EMBL | CBI39470.1 | 0 | 6 | 460 | 11 | 467 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_683538.1 | 0 | 13 | 460 | 14 | 460 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002334812.1 | 0 | 6 | 460 | 9 | 465 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 25 | 346 | 2 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 25 | 346 | 2 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 25 | 346 | 2 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghr_A | 0 | 25 | 346 | 2 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1aq0_B | 0 | 25 | 346 | 2 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |