Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 318190 |
Family | GH28 |
Protein Properties | Length: 450 Molecular Weight: 46305.1 Isoelectric Point: 8.317 |
Chromosome | Chromosome/Scaffold: 3 Start: 5801446 End: 5803118 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 101 | 429 | 0 |
ACAAGSTITVPKGEYLVESLEFKGPCKGPVTLELNGNLKAPATVKTSKPHSGWIDFENIADFTLNGNGAIFDGQGSLAWKANDCAKTGKCNSLPINIRFT GLTNSKIKSITSTNSKLFHMNILNCKNITLEDIGIDAPPESLNTDGIHIGRSNGVNLLGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYP NEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVSTPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKLMCSKGV PCTNIALADINLVHNGKEGPAVSACSNIK |
Full Sequence |
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Protein Sequence Length: 450 Download |
MVGFRRASGV LLVVLVVMAT TIVNGTPVVD KAKDAAESVG DKVSEAATTV GDKAKDAAAS 60 VGVKVPGAKA GGASLDIKAS GAKGDGKTDD SAAFAAAWKE ACAAGSTITV PKGEYLVESL 120 EFKGPCKGPV TLELNGNLKA PATVKTSKPH SGWIDFENIA DFTLNGNGAI FDGQGSLAWK 180 ANDCAKTGKC NSLPINIRFT GLTNSKIKSI TSTNSKLFHM NILNCKNITL EDIGIDAPPE 240 SLNTDGIHIG RSNGVNLLGA KIKTGDDCVS IGDGTENLIV ENVECGPGHG ISIGSLGRYP 300 NEQPVKGVTV RKCLIKNTDN GVRIKTWPGS PPGIASNILF EDITMDNVST PVLIDQEYCP 360 YGHCKAGVPS KVKLSDVTIK NIKGTSATKV AVKLMCSKGV PCTNIALADI NLVHNGKEGP 420 AVSACSNIKP ILSGKLVPAA CTEVAKTGP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-68 | 81 | 438 | 364 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-71 | 81 | 441 | 370 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 3.0e-76 | 75 | 441 | 370 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-100 | 106 | 441 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-113 | 76 | 442 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL32525.1 | 0 | 1 | 449 | 1 | 445 | polygalacturonase; pectinase [Arabidopsis thaliana] |
EMBL | CAA11160.1 | 0 | 1 | 449 | 1 | 445 | polygalacturonase [Arabidopsis thaliana] |
EMBL | CAA51033.1 | 0 | 1 | 449 | 1 | 444 | exopolygalacturonase [Arabidopsis thaliana] |
EMBL | CAA51692.1 | 0 | 1 | 449 | 1 | 445 | exopolygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_188020.1 | 0 | 1 | 449 | 1 | 445 | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 9e-23 | 131 | 441 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 9e-23 | 131 | 441 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 9e-23 | 131 | 441 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 9e-23 | 131 | 441 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 9e-23 | 131 | 441 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |