Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 318449 |
Family | GH28 |
Protein Properties | Length: 453 Molecular Weight: 48833 Isoelectric Point: 5.4747 |
Chromosome | Chromosome/Scaffold: 3 Start: 7188650 End: 7190463 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 412 | 0 |
KGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGATILASPDPSHWDVVSPLPSYGRGIELPGKRYRSLINGDNLIDVVITGENGTFDGQGAAWWEWLETGSL NYSRPHIIEFVSSKHILISNLTFLNAPSINIHPVYCSQIHIRKVLIETSVDSPYVLGVAPDSSDNVCIEDSTINVGHDAVSLKSGWDQYGIHYGRPTTAV YIRNLSLKSPTGAGISFGSEMSGGISDVTVERLNIQSSHVGVAFRTTRGRGGYIRNITISDVDLTSVDTAIVANGHTGSHPDDKFDWDALPVVTHIVLRN FTGVDIGLAGNLTGIGESPFTSICLTDIHLHTHSDSWICSNVS |
Full Sequence |
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Protein Sequence Length: 453 Download |
MQVALVWLLA FTILLIRGEG NNAICKEIFK LDPRPHSVSI LEFGAVGDGK TLNTLAFQNA 60 IFYLKSFADK GGAQLYVPPG KWLTGSFNLT SHLTLFLEKG ATILASPDPS HWDVVSPLPS 120 YGRGIELPGK RYRSLINGDN LIDVVITGEN GTFDGQGAAW WEWLETGSLN YSRPHIIEFV 180 SSKHILISNL TFLNAPSINI HPVYCSQIHI RKVLIETSVD SPYVLGVAPD SSDNVCIEDS 240 TINVGHDAVS LKSGWDQYGI HYGRPTTAVY IRNLSLKSPT GAGISFGSEM SGGISDVTVE 300 RLNIQSSHVG VAFRTTRGRG GYIRNITISD VDLTSVDTAI VANGHTGSHP DDKFDWDALP 360 VVTHIVLRNF TGVDIGLAGN LTGIGESPFT SICLTDIHLH THSDSWICSN VSGFSDDVSP 420 EPCQELMSSP SSCFAGGSIY GGDAAAQSYY IW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-14 | 34 | 341 | 325 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-19 | 136 | 411 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-21 | 35 | 341 | 325 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-23 | 7 | 420 | 427 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 4.0e-50 | 38 | 363 | 356 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM62920.1 | 0 | 1 | 452 | 1 | 453 | polygalacturonase, putative [Arabidopsis thaliana] |
DDBJ | BAA95779.1 | 0 | 1 | 452 | 1 | 453 | polygalacturonase-like protein [Arabidopsis thaliana] |
RefSeq | NP_188308.1 | 0 | 1 | 452 | 3 | 455 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002314352.1 | 0 | 14 | 432 | 15 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 14 | 441 | 17 | 445 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-34 | 36 | 396 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-34 | 36 | 396 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-34 | 36 | 396 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-34 | 36 | 396 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000001 | 82 | 341 | 52 | 309 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |