| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 321648 |
| Family | CBM43 |
| Protein Properties | Length: 550 Molecular Weight: 59924.8 Isoelectric Point: 5.9775 |
| Chromosome | Chromosome/Scaffold: 4 Start: 19222580 End: 19224466 |
| Description | glycosyl hydrolase family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 356 | 437 | 8.5e-29 |
| WCVAKQEATYMQLQANIDWVCSHGIDCTPISLGGICFDNNNMTTRSSFIMNAYYQSKGCSDDACNFSGSGMVTTTNPSTSTC | |||
| CBM43 | 455 | 536 | 2.2e-30 |
| WCMAKQEATETQLQANIDWVCSQGIDCKPISPGGLCFDNNNIKTRSTFIMNAYYQSKGYSREACDFKGSGIVTNTNPSTSTC | |||
| GH17 | 30 | 338 | 0 |
| IGINYGTLGNLQPPQQVVDFIKKNTTFASVKIYDANPDILRSFAGSEINVTIMVPNGNIPAMVNVANARQWVAANVLPFHQQIKFKYLCVGNEILSSNDN NLISNLVPAMQSLNEALKASNLTYIKVTTPHAFTISFNHNTPSESRFTDDQKDFFTKILEFHRQAKSPFMINAYTFFTMDPNNVSYAIFGPSNSVTDTNT RQTYNNMFDAVMDATYSAMNALGYGDLDIAVGETGWPTACDAPWCSPQNAENYNLNIIKRAEVIGTPLMPNRHIDIFIFALFNEDGKPGPTRERNWGIFK PDFSPMYDV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 550 Download |
| MAKTTRFFTL PFLLIVAGVI FQLSAVTSAI GINYGTLGNL QPPQQVVDFI KKNTTFASVK 60 IYDANPDILR SFAGSEINVT IMVPNGNIPA MVNVANARQW VAANVLPFHQ QIKFKYLCVG 120 NEILSSNDNN LISNLVPAMQ SLNEALKASN LTYIKVTTPH AFTISFNHNT PSESRFTDDQ 180 KDFFTKILEF HRQAKSPFMI NAYTFFTMDP NNVSYAIFGP SNSVTDTNTR QTYNNMFDAV 240 MDATYSAMNA LGYGDLDIAV GETGWPTACD APWCSPQNAE NYNLNIIKRA EVIGTPLMPN 300 RHIDIFIFAL FNEDGKPGPT RERNWGIFKP DFSPMYDVGV LKGGISPLPP INNGKWCVAK 360 QEATYMQLQA NIDWVCSHGI DCTPISLGGI CFDNNNMTTR SSFIMNAYYQ SKGCSDDACN 420 FSGSGMVTTT NPSTSTCPIP IGEGGGGTES KSGNWCMAKQ EATETQLQAN IDWVCSQGID 480 CKPISPGGLC FDNNNIKTRS TFIMNAYYQS KGYSREACDF KGSGIVTNTN PSTSTCVVRG 540 GGAPASVTP* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 8.0e-20 | 455 | 525 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| pfam07983 | X8 | 7.0e-20 | 355 | 426 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 6.0e-35 | 455 | 537 | 83 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| smart00768 | X8 | 2.0e-35 | 355 | 437 | 83 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-75 | 30 | 338 | 316 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK76666.1 | 0 | 33 | 437 | 32 | 447 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
| GenBank | AAK76666.1 | 2e-24 | 442 | 536 | 347 | 447 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
| RefSeq | NP_181494.1 | 0 | 33 | 548 | 33 | 548 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_191103.1 | 0 | 33 | 437 | 32 | 447 | glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] |
| RefSeq | NP_191103.1 | 2e-24 | 442 | 536 | 347 | 447 | glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 0 | 30 | 338 | 2 | 313 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3f55_C | 0 | 30 | 338 | 2 | 313 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3f55_B | 0 | 30 | 338 | 2 | 313 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3f55_A | 0 | 30 | 338 | 2 | 313 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3em5_D | 0 | 30 | 338 | 2 | 313 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
