| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 324272 |
| Family | GH28 |
| Protein Properties | Length: 590 Molecular Weight: 65099.1 Isoelectric Point: 5.2318 |
| Chromosome | Chromosome/Scaffold: 5 Start: 18591035 End: 18593329 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 66 | 394 | 0 |
| SSSSICRVTFPSGNYLTAKLHLRSGVVLDVTENAVLLGGPRIEDYYPAETSSDWYVVVANNATDVGITGGGAIDGQGSKFVVRFDEKKNVMVSWNQTGAC LGDECRPRLVGFVDSRNVEIWNITLREPAYWCLHIVRCENTSVHDVSILGDFNTPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTGPLYNLTATDCW IRTKSSAIKLGSASWFDFKGLVFDNITIFESHRGLGMQIRDGGNVSDITFSNINISTRYYDPSWWGRAEPIYITTCPRDSSAKEGSISNLLFVNITINSE NGVFLSGSPNGLLSDIKFKNMNLTVRRWS | |||
| Full Sequence |
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| Protein Sequence Length: 590 Download |
| MGSILLILLF FSLVQSRSYT SYSKIQLPGD SLALSVTDFG ATGDGINYDT SAVQSTIDAC 60 NRHYTSSSSI CRVTFPSGNY LTAKLHLRSG VVLDVTENAV LLGGPRIEDY YPAETSSDWY 120 VVVANNATDV GITGGGAIDG QGSKFVVRFD EKKNVMVSWN QTGACLGDEC RPRLVGFVDS 180 RNVEIWNITL REPAYWCLHI VRCENTSVHD VSILGDFNTP NNDGIDIEDS NNTVITRCHI 240 DTGDDAICPK TYTGPLYNLT ATDCWIRTKS SAIKLGSASW FDFKGLVFDN ITIFESHRGL 300 GMQIRDGGNV SDITFSNINI STRYYDPSWW GRAEPIYITT CPRDSSAKEG SISNLLFVNI 360 TINSENGVFL SGSPNGLLSD IKFKNMNLTV RRWSNYSAGL VDYRPGCRGL VNHSATAGII 420 MEHVNGFSIE NVDLKWSDDL NSGWNVPLEF RPSTVNNVSL FEFDYYVLSE IGITEMASTK 480 PLIVAAKTLR NRIHFRSGST SAGPSRWATP GHEERPKGYF MNRTPPPPGQ SRKWEDWELP 540 CYITSFLTIV ILGVGLNAKP DLSIETWAHQ KALERLEMEK LASVGDSSD* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-8 | 34 | 402 | 402 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-11 | 158 | 389 | 249 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| pfam10183 | ESSS | 4.0e-36 | 492 | 579 | 90 | + ESSS subunit of NADH:ubiquinone oxidoreductase (complex I). This subunit is part of the mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences. | ||
| COG5434 | PGU1 | 3.0e-39 | 33 | 375 | 389 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| PLN02453 | PLN02453 | 2.0e-60 | 478 | 581 | 105 | + complex I subunit | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 1 | 588 | 2 | 613 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 1 | 473 | 2 | 487 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 4 | 464 | 8 | 463 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 4 | 463 | 8 | 457 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 23 | 463 | 1 | 437 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uvf_B | 2e-16 | 34 | 317 | 157 | 484 | A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex With Galactose |
| PDB | 2uvf_A | 2e-16 | 34 | 317 | 157 | 484 | A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex With Galactose |
| PDB | 2uve_B | 2e-16 | 34 | 317 | 157 | 484 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 2uve_A | 2e-16 | 34 | 317 | 157 | 484 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 3jur_D | 5e-16 | 26 | 315 | 22 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
