| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 325028 |
| Family | GT30 |
| Protein Properties | Length: 440 Molecular Weight: 48953.2 Isoelectric Point: 9.7834 |
| Chromosome | Chromosome/Scaffold: 6 Start: 1174648 End: 1176988 |
| Description | KDO transferase A |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT30 | 39 | 218 | 0 |
| RWPERFGHPSAVRPPGSLVWFHAVSLGEGMAAIPVIRHCNERRPDLTILMTTTTVSAFEVIKDQLPVGVLHQFAPLDTPVAIDRFLGHWKPNAIIIMENE LWPNLIMAASGLLIPLAMLNARMSTKSFKRWSSPLLLPLVSLLLSKFSLIAPLSTLQGIHFQLLHAPPFVINYSGDLKYV | |||
| Full Sequence |
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| Protein Sequence Length: 440 Download |
| MKLGVFVYRL YRVLTYGVSP LINLHIRWRR LRGLEPCRRW PERFGHPSAV RPPGSLVWFH 60 AVSLGEGMAA IPVIRHCNER RPDLTILMTT TTVSAFEVIK DQLPVGVLHQ FAPLDTPVAI 120 DRFLGHWKPN AIIIMENELW PNLIMAASGL LIPLAMLNAR MSTKSFKRWS SPLLLPLVSL 180 LLSKFSLIAP LSTLQGIHFQ LLHAPPFVIN YSGDLKYVVN KFNASSGTSE SIRDLKVELS 240 EMKVWIASSL HRGEEEVILG VHNMLLESHP DSVVIIVPRH PHHGQQIAHK LRKDGQSVAL 300 RSQNEKLTSR KTNIYVVDTL GELRELYSVA PIAVIGGSFI PGLTGHNLSE AAAAGCAVIT 360 GCHVGHFSHM VKAMQQSNPL SVTQVSTKLE LKEAVDLLLS NPEILETQQR ASKEVYESLS 420 SCIITNIWNL LNLHIFRGK* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam04413 | Glycos_transf_N | 2.0e-56 | 38 | 217 | 182 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. |
| COG1519 | KdtA | 5.0e-106 | 9 | 416 | 409 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] |
| PRK05749 | PRK05749 | 2.0e-112 | 9 | 415 | 413 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016740 | transferase activity |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 5e-27 | 42 | 431 | 28 | 371 | A Chain A, Structure Of The Bacteriophage T4 Tail Terminator Protein, Gp15 (c- Terminal Truncation Mutant 1-261). |
| PDB | 2xcu_C | 5e-27 | 42 | 431 | 28 | 371 | A Chain A, Structure Of The Bacteriophage T4 Tail Terminator Protein, Gp15 (c- Terminal Truncation Mutant 1-261). |
| PDB | 2xcu_B | 5e-27 | 42 | 431 | 28 | 371 | A Chain A, Structure Of The Bacteriophage T4 Tail Terminator Protein, Gp15 (c- Terminal Truncation Mutant 1-261). |
| PDB | 2xcu_A | 5e-27 | 42 | 431 | 28 | 371 | A Chain A, Structure Of The Bacteriophage T4 Tail Terminator Protein, Gp15 (c- Terminal Truncation Mutant 1-261). |
| PDB | 2xci_D | 5e-27 | 42 | 431 | 28 | 371 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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