Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 326950 |
Family | GH28 |
Protein Properties | Length: 410 Molecular Weight: 44575.2 Isoelectric Point: 6.3062 |
Chromosome | Chromosome/Scaffold: 6 Start: 12791807 End: 12796517 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 76 | 392 | 0 |
GEDNINTLLIPSGKTYLLQPIEFKGPCKSTSIKIQLDGIIVAPSNIKTWSNPKSQMWISFSSVFSLMIDGSGKIDGRGSSFWEALHIYKCDNLTINGITS IDSPKTHISIKGCNYATISKINILAPEKSPNTDGIDISYSTNIKISDSTIQTGDDCIAIDNGSSGINITQINCGPGHGISVGSLGADGTNAEVSDVHVTH CTFNETMNGARIKTWQGGQGYARNISFENITLINTRNPIIIDQQYIDKGHIDATKDSAVAIGNVKYIGFRGTTVNEYAITLNCSAITHCKDVVMDDIQVT MENGEKAKAECQNVEGE |
Full Sequence |
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Protein Sequence Length: 410 Download |
MVTVQKKRNR PVIRPRYHSI GWSRETILRI SILINFIYFG LVNGQNYNVL KFGAKGDGET 60 DDSNAFIQAW NATCGGEDNI NTLLIPSGKT YLLQPIEFKG PCKSTSIKIQ LDGIIVAPSN 120 IKTWSNPKSQ MWISFSSVFS LMIDGSGKID GRGSSFWEAL HIYKCDNLTI NGITSIDSPK 180 THISIKGCNY ATISKINILA PEKSPNTDGI DISYSTNIKI SDSTIQTGDD CIAIDNGSSG 240 INITQINCGP GHGISVGSLG ADGTNAEVSD VHVTHCTFNE TMNGARIKTW QGGQGYARNI 300 SFENITLINT RNPIIIDQQY IDKGHIDATK DSAVAIGNVK YIGFRGTTVN EYAITLNCSA 360 ITHCKDVVMD DIQVTMENGE KAKAECQNVE GESSDSDLMR DCFKNSSTL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-85 | 30 | 388 | 377 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 2.0e-88 | 47 | 389 | 361 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 1.0e-99 | 49 | 408 | 376 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 6.0e-112 | 48 | 394 | 360 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 0 | 1 | 409 | 409 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC79138.1 | 0 | 25 | 405 | 2 | 381 | putative polygalacturonase [Arabidopsis thaliana] |
EMBL | CAA20037.1 | 0 | 34 | 408 | 1 | 373 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 25 | 408 | 2 | 393 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_198105.2 | 0 | 1 | 408 | 4 | 414 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_199297.1 | 0 | 25 | 404 | 2 | 380 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-20 | 142 | 389 | 74 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-20 | 142 | 389 | 74 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-20 | 142 | 389 | 74 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-20 | 142 | 389 | 74 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-20 | 142 | 389 | 74 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |