Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 327610 |
Family | GH28 |
Protein Properties | Length: 481 Molecular Weight: 52395.3 Isoelectric Point: 7.8992 |
Chromosome | Chromosome/Scaffold: 6 Start: 24065688 End: 24067855 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 107 | 436 | 0 |
YKNNTASVLLVPYGFTFMIRSTIFTGPCRSYQYFQVDGTIVPRDGPKSWPSSLDKRQWLVFYRINGMALKGVGVIDGRGQNWWDLPCKPHRQNVNKTKLA GPCESPAALRFFMSSNVTVKGLSIKNSPQVHLKLDGCHVVHINSIRIISPSSSPNTDGIHIENSKSVEIYNSVISNGDDCVSIGPGSYDIDIRNLTCGPG GHGISIGSLGEKSSHACVSNVTVRDSFIKFSENGVRIKTWQGGSGSVSGVTFNNIHVDTVRNPIIIDQYYCTAKSCANKTSAVFVNDIVYQSIKGTYDIR SPPMHFGCSNNVPCTNLTLSDIELLPSKKD |
Full Sequence |
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Protein Sequence Length: 481 Download |
MLKLSRDPIL CITTLILITF SLFFYETEAR LHHHTDKDNP NPKPEPPSQP PSSSPKANDP 60 SSKSPSLPQD LDHEVVYNVK KYGAVGDGVT DDTESFKTAW DSACGNYKNN TASVLLVPYG 120 FTFMIRSTIF TGPCRSYQYF QVDGTIVPRD GPKSWPSSLD KRQWLVFYRI NGMALKGVGV 180 IDGRGQNWWD LPCKPHRQNV NKTKLAGPCE SPAALRFFMS SNVTVKGLSI KNSPQVHLKL 240 DGCHVVHINS IRIISPSSSP NTDGIHIENS KSVEIYNSVI SNGDDCVSIG PGSYDIDIRN 300 LTCGPGGHGI SIGSLGEKSS HACVSNVTVR DSFIKFSENG VRIKTWQGGS GSVSGVTFNN 360 IHVDTVRNPI IIDQYYCTAK SCANKTSAVF VNDIVYQSIK GTYDIRSPPM HFGCSNNVPC 420 TNLTLSDIEL LPSKKDIVVD PFCWNAYGIT DEFSVPLISC LKSNPSTSLL SGLSGRCGSP 480 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 7.0e-69 | 77 | 446 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 9.0e-73 | 78 | 462 | 392 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-80 | 108 | 430 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-88 | 78 | 430 | 356 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-105 | 60 | 450 | 393 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD22651.1 | 0 | 1 | 480 | 1 | 452 | AC007138_15 putative polygalacturonidase [Arabidopsis thaliana] |
EMBL | CBI37004.1 | 0 | 76 | 477 | 88 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_192098.2 | 0 | 1 | 480 | 1 | 468 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_563654.1 | 0 | 72 | 479 | 84 | 490 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002320271.1 | 0 | 76 | 461 | 42 | 422 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-26 | 180 | 434 | 79 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-26 | 180 | 434 | 79 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-26 | 180 | 434 | 79 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-26 | 180 | 434 | 79 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-26 | 180 | 434 | 79 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479564 | 327 | 84 | 410 | 0 |
EV124391 | 242 | 203 | 444 | 0 |
DV135481 | 292 | 86 | 377 | 0 |
DR450143 | 295 | 125 | 419 | 0 |
DY277859 | 369 | 74 | 439 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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