Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 328395 |
Family | GH28 |
Protein Properties | Length: 476 Molecular Weight: 52175.5 Isoelectric Point: 7.6985 |
Chromosome | Chromosome/Scaffold: 7 Start: 3263594 End: 3266597 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 104 | 449 | 0 |
EGGAQLNVPMGTWLSGSFNLTSNFTLFLQRGAVILGSKDLDEWPIVEPLPSYGRGRERPGGRHISLIHGDNLTNVVITGENGTIDGQGKMWWELWWNRTL VHTRGHLIELKNCHNILISNLTLLNSPFWTIHPVYCSNVVIRNMTILAPINAPNTDGIDPDSSTNVCIEDCYIESGDDLIAVKSGWDQYGMAVARPSSNI VIRRISGTTRTCSGVGIGSEMSGGIFNITVEDIHVWDSAAGLRIKTDKGRGGYISNITFNNVLLEKVKVPIRFSSGSNDHSDDKWDPKALPRVKGIYISN VVSLNSRKAPMLLGVEGTSFQDVCLRNVTLLGLPQTEKWKCKDVSG |
Full Sequence |
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Protein Sequence Length: 476 Download |
MESEKNPTTV LSAITRPSCA FLLLVFTALA ILSLQISSNS FIPIWIPTSQ YHDPVTCSGF 60 FNHDPFPNRK VMSITDFGGV GDGKTSNTEA FRRAVRHLEG FAAEGGAQLN VPMGTWLSGS 120 FNLTSNFTLF LQRGAVILGS KDLDEWPIVE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI 180 TGENGTIDGQ GKMWWELWWN RTLVHTRGHL IELKNCHNIL ISNLTLLNSP FWTIHPVYCS 240 NVVIRNMTIL APINAPNTDG IDPDSSTNVC IEDCYIESGD DLIAVKSGWD QYGMAVARPS 300 SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI 360 TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY ISNVVSLNSR KAPMLLGVEG 420 TSFQDVCLRN VTLLGLPQTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIS QCSYR* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-22 | 68 | 453 | 409 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-23 | 72 | 436 | 392 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 4.0e-30 | 66 | 462 | 427 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-31 | 170 | 447 | 292 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 6.0e-60 | 71 | 384 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAB38802.1 | 0 | 1 | 475 | 1 | 462 | putative protein [Arabidopsis thaliana] |
EMBL | CAN76963.1 | 0 | 11 | 469 | 1 | 463 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37530.1 | 0 | 1 | 472 | 1 | 476 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_195070.2 | 0 | 1 | 475 | 1 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002274138.1 | 0 | 1 | 472 | 1 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 66 | 435 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 66 | 435 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 66 | 435 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 66 | 435 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-25 | 116 | 447 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |