Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 329713 |
Family | GH28 |
Protein Properties | Length: 415 Molecular Weight: 45180.2 Isoelectric Point: 9.5847 |
Chromosome | Chromosome/Scaffold: 7 Start: 10999211 End: 11000923 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 59 | 402 | 0 |
DKACKSSSSSVHFIIPRGEFSVGPLRFSGPCTNVSNLTVRVKASTDLSKYRSGGAWIEFGWINGLTLTGGGTFDGQGALAWPFNNCTSDSNCKLLPTSLK FVGMNRTVVRRISSVNSKFFHIALVECRDFKGTRLNITAPSDSPNTDGIHIERSSNVYFSRSHIATGDDCVSIGQGNSQITITSIKCGPGHGISVGSLGR YPNEKDVKGLVVKDCKISGTTNGIRIKTWANSPGLSAATNMTFENIIMNNVTNPIIIDQSYCPFSSCISNVPSKVELSEIYFKNIRGTSSSRVAVQLHCS RGMPCKKVYLENVHLDLSSSDGGRKQSRNRGNEAVSSSCRNVRA |
Full Sequence |
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Protein Sequence Length: 415 Download |
MENFRYLKIF SFIFVILLSS SEAETRVDKS SVFLVDIRSF GARANDHRDH TKAFVAAWDK 60 ACKSSSSSVH FIIPRGEFSV GPLRFSGPCT NVSNLTVRVK ASTDLSKYRS GGAWIEFGWI 120 NGLTLTGGGT FDGQGALAWP FNNCTSDSNC KLLPTSLKFV GMNRTVVRRI SSVNSKFFHI 180 ALVECRDFKG TRLNITAPSD SPNTDGIHIE RSSNVYFSRS HIATGDDCVS IGQGNSQITI 240 TSIKCGPGHG ISVGSLGRYP NEKDVKGLVV KDCKISGTTN GIRIKTWANS PGLSAATNMT 300 FENIIMNNVT NPIIIDQSYC PFSSCISNVP SKVELSEIYF KNIRGTSSSR VAVQLHCSRG 360 MPCKKVYLEN VHLDLSSSDG GRKQSRNRGN EAVSSSCRNV RANYIGTQIP PPCH* 420 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02155 | PLN02155 | 7.0e-68 | 27 | 413 | 390 | + polygalacturonase |
PLN02218 | PLN02218 | 4.0e-73 | 35 | 397 | 369 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 1.0e-73 | 23 | 413 | 399 | + Probable polygalacturonase |
pfam00295 | Glyco_hydro_28 | 4.0e-84 | 64 | 373 | 312 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02188 | PLN02188 | 0 | 22 | 414 | 393 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA16789.1 | 0 | 53 | 414 | 1 | 362 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI37725.1 | 0 | 15 | 413 | 35 | 387 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_193552.1 | 0 | 1 | 414 | 1 | 414 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002279959.1 | 0 | 15 | 413 | 35 | 419 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312795.1 | 0 | 22 | 413 | 25 | 409 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-25 | 127 | 373 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000000003 | 96 | 360 | 44 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000003 | 96 | 360 | 44 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000003 | 96 | 360 | 44 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000003 | 96 | 360 | 44 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |