Basic Information | |
---|---|
Species | Ricinus communis |
Cazyme ID | 33029.m000022 |
Family | GH28 |
Protein Properties | Length: 412 Molecular Weight: 44199.9 Isoelectric Point: 6.3948 |
Chromosome | Chromosome/Scaffold: 33029 Start: 168 End: 1406 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 48 | 376 | 0 |
DCAAAGGGTVVLAGAPMYVSGPLVLKSHITLSIATGTTLAGSEEHDDYPLIEELRESGRQPLLSSDKATDITINGGGTIDGRGQSWWPDRSAANKRPRLI VFRHSSHILMENITVQNSPSWQIVPYYSTDLVFRNMTVYAPDRVSHNTDGIDPFSSSHVLIEHVTIDTGDDNIAIKSGQPNSPGGDEPSHDIVIRDSTFL HGHGLSIGSEVAGGVYNVLAERIHFKGTGTGVRIKSNRDRGNELKHFVYRDLKMEDVNTPILISEFYPKIPDVIDSQPVGRLTPRFSDITIENLTATGAR QAAIIVGLPESPVTGLKLTNVRIKADKGA |
Full Sequence |
---|
Protein Sequence Length: 412 Download |
MNARLLPALI LALPGLAFAA KSCDVKAYGA TGDGVTKDTA AIQKAIDDCA AAGGGTVVLA 60 GAPMYVSGPL VLKSHITLSI ATGTTLAGSE EHDDYPLIEE LRESGRQPLL SSDKATDITI 120 NGGGTIDGRG QSWWPDRSAA NKRPRLIVFR HSSHILMENI TVQNSPSWQI VPYYSTDLVF 180 RNMTVYAPDR VSHNTDGIDP FSSSHVLIEH VTIDTGDDNI AIKSGQPNSP GGDEPSHDIV 240 IRDSTFLHGH GLSIGSEVAG GVYNVLAERI HFKGTGTGVR IKSNRDRGNE LKHFVYRDLK 300 MEDVNTPILI SEFYPKIPDV IDSQPVGRLT PRFSDITIEN LTATGARQAA IIVGLPESPV 360 TGLKLTNVRI KADKGAVIKY AHMDTKGFIV NARQGHAYMT GPDMVDASGE TQ 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 3.0e-19 | 24 | 375 | 366 | + polygalacturonase | ||
PLN02793 | PLN02793 | 6.0e-20 | 25 | 379 | 379 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-24 | 25 | 387 | 381 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-32 | 72 | 370 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 8.0e-56 | 24 | 362 | 394 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002536062.1 | 0 | 1 | 412 | 1 | 412 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | YP_002755700.1 | 0 | 12 | 395 | 26 | 414 | polygalacturonase [Acidobacterium capsulatum ATCC 51196] |
RefSeq | YP_003016676.1 | 0 | 12 | 395 | 25 | 447 | glycoside hydrolase family 28 [Pectobacterium carotovorum subsp. carotovorum PC1] |
RefSeq | YP_003260572.1 | 0 | 12 | 395 | 25 | 447 | glycoside hydrolase family 28 [Pectobacterium wasabiae WPP163] |
RefSeq | YP_049296.1 | 0 | 12 | 395 | 25 | 447 | putative polygalacturonase [Pectobacterium atrosepticum SCRI1043] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 7e-39 | 21 | 405 | 26 | 447 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 7e-39 | 21 | 405 | 26 | 447 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 7e-39 | 21 | 405 | 26 | 447 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 7e-39 | 21 | 405 | 26 | 447 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-37 | 39 | 383 | 26 | 374 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |