Basic Information | |
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Species | Selaginella moellendorffii |
Cazyme ID | 33152 |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 42406.8 Isoelectric Point: 5.5097 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 35 | 376 | 0 |
ADKGGAQLYVPRGRWLTGSFNLTSHLTLFLEEGAVILGSQDLLEWPVIPALPSYGRGRELPGGRHISLIHGKNMVDVVITGANGTIDGQGSVWWDWFHNK TLDFTRGHLVELIDSRHITISNVTFKNSPFWTIHPVYCSDVLIQDVTILAPPYAPNIDGIDPDSSSNVCIRDCYISTGDDLISIKSGWDEHGINYGMPST NVCIHNVSGQSPTSAGIAFGSEMSGGISDVFIKSVRVANSRSGIRIKTGAGRGGYITNISISDLQLENVSVAFDFTALYGGHPDDGYDPRALPVIRGISI RDVVGHEIGWAGCMAGLEEAPFRDLCFANVSLSVGAGAWNCS |
Full Sequence |
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Protein Sequence Length: 393 Download |
RPHSVSITDF GAVGDGRIVN TLAFQNAIFY LKSFADKGGA QLYVPRGRWL TGSFNLTSHL 60 TLFLEEGAVI LGSQDLLEWP VIPALPSYGR GRELPGGRHI SLIHGKNMVD VVITGANGTI 120 DGQGSVWWDW FHNKTLDFTR GHLVELIDSR HITISNVTFK NSPFWTIHPV YCSDVLIQDV 180 TILAPPYAPN IDGIDPDSSS NVCIRDCYIS TGDDLISIKS GWDEHGINYG MPSTNVCIHN 240 VSGQSPTSAG IAFGSEMSGG ISDVFIKSVR VANSRSGIRI KTGAGRGGYI TNISISDLQL 300 ENVSVAFDFT ALYGGHPDDG YDPRALPVIR GISIRDVVGH EIGWAGCMAG LEEAPFRDLC 360 FANVSLSVGA GAWNCSNTYG FSERVVPSPC LEL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-20 | 117 | 303 | 191 | + polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-23 | 3 | 393 | 417 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 6.0e-26 | 2 | 303 | 309 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-27 | 110 | 390 | 303 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-56 | 5 | 309 | 328 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR35653.1 | 0 | 1 | 393 | 49 | 442 | unknown [Zea mays] |
EMBL | CBI37055.1 | 0 | 1 | 393 | 39 | 432 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 1 | 393 | 90 | 483 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002320934.1 | 0 | 1 | 393 | 32 | 424 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002459610.1 | 0 | 1 | 393 | 56 | 449 | hypothetical protein SORBIDRAFT_02g007470 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.99993e-41 | 3 | 363 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.99993e-41 | 3 | 363 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.99993e-41 | 3 | 363 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.99993e-41 | 3 | 363 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000002 | 49 | 377 | 52 | 371 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797483 | 396 | 1 | 393 | 0 |
HO797919 | 366 | 1 | 366 | 0 |
GO869614 | 301 | 1 | 301 | 0 |
EX380083 | 258 | 1 | 258 | 0 |
FE681628 | 281 | 1 | 281 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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