| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 332548 |
| Family | CBM43 |
| Protein Properties | Length: 179 Molecular Weight: 19699.1 Isoelectric Point: 4.2315 |
| Chromosome | Chromosome/Scaffold: 8 Start: 20889176 End: 20890341 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 26 | 90 | 7.4e-27 |
| WCMAMPGTSDEQLQANIDFGCSNGVDCTPIQPGGTCYDPNTLFDHASYVMNAYYQSHGRIEDACS | |||
| CBM43 | 93 | 174 | 5.7e-33 |
| WCMAMPTARDEQLQANIDFACSQNVDCTPIQPGGTCYDPNTLFNHASFAMNAYYQSHGRTEDACRFDRTGCFVFIDPSNGSC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 179 Download |
| MSSLQLLTLL LLVSTVAIPV VTCRQWCMAM PGTSDEQLQA NIDFGCSNGV DCTPIQPGGT 60 CYDPNTLFDH ASYVMNAYYQ SHGRIEDACS RQWCMAMPTA RDEQLQANID FACSQNVDCT 120 PIQPGGTCYD PNTLFNHASF AMNAYYQSHG RTEDACRFDR TGCFVFIDPS NGSCVYYT* 180 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 2.0e-20 | 25 | 90 | 71 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| pfam07983 | X8 | 2.0e-21 | 92 | 162 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-29 | 25 | 90 | 66 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| smart00768 | X8 | 1.0e-36 | 92 | 176 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB10565.1 | 0 | 1 | 178 | 1 | 178 | unnamed protein product [Arabidopsis thaliana] |
| RefSeq | NP_001078788.1 | 1e-38 | 3 | 89 | 2 | 88 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_001078788.1 | 0 | 90 | 178 | 22 | 110 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_201128.2 | 2.94273e-44 | 1 | 97 | 1 | 99 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_201128.2 | 1.4013e-45 | 91 | 178 | 24 | 111 | unknown protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 6e-24 | 93 | 176 | 13 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 2jon_A | 2e-21 | 26 | 84 | 13 | 71 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
