| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 333412 |
| Family | CBM43 |
| Protein Properties | Length: 125 Molecular Weight: 13641.3 Isoelectric Point: 5.6155 |
| Chromosome | Chromosome/Scaffold: 835 Start: 4 End: 378 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 35 | 119 | 2.4e-33 |
| WCVANNKATDEQLQANIDWCCSYEGGFRDCTPINPGGVCYEPNTLRDHASYVMNLYYQNLGSTKDQCTFNGTGTQVRKDPSHGAC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 125 Download |
| MSLSLTLLLF ILVSTVSVTS TQRNLSPAAE NKGVWCVANN KATDEQLQAN IDWCCSYEGG 60 FRDCTPINPG GVCYEPNTLR DHASYVMNLY YQNLGSTKDQ CTFNGTGTQV RKDPSHGACI 120 FISY* 180 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 8.0e-21 | 35 | 108 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 5.0e-34 | 35 | 121 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001031243.1 | 8e-29 | 1 | 121 | 1 | 110 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_176859.1 | 9e-30 | 25 | 121 | 16 | 110 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
| RefSeq | NP_192648.2 | 3e-28 | 4 | 123 | 6 | 116 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
| RefSeq | NP_201129.1 | 0 | 1 | 124 | 6 | 129 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
| RefSeq | NP_201130.1 | 0 | 1 | 124 | 8 | 131 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 4e-25 | 26 | 123 | 4 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
