| Basic Information | |
|---|---|
| Species | Selaginella moellendorffii |
| Cazyme ID | 33909 |
| Family | GH28 |
| Protein Properties | Length: 357 Molecular Weight: 37190.3 Isoelectric Point: 6.5827 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 24 | 357 | 0 |
| YNAACQAGDNAVILVPSTSAGYYLSPISFGECTSVTMKVDGTLHAIPRSAWLSKFSSEKSWLLFTKVTDFTLTGGTFNGNGQDWWAHSCKKDKSQHCTDA PTAVRFEDSKNIKVEGITITNSPQIHITFSDSQAIQATDVVINSPESSPNTDGIHVSGSTNVVVRDADISAGDDCVSIVSGSSNIQVLGGRCGPGHGISI GSLGKGGSYATVSNVQVSGVKIDAATNGVRIKTWQGGKGYVSNVIFENISMDNVKNPIIIDQNYCDGGCGKKRGSSLTIQGVTYSNIVGTSASPDGINLH CSSSGACTNIHFSNVKLTLGSSGKAAGAVCENVQ | |||
| Full Sequence |
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| Protein Sequence Length: 357 Download |
| FNVKNYGAVG DGKHDDAQAF LDAYNAACQA GDNAVILVPS TSAGYYLSPI SFGECTSVTM 60 KVDGTLHAIP RSAWLSKFSS EKSWLLFTKV TDFTLTGGTF NGNGQDWWAH SCKKDKSQHC 120 TDAPTAVRFE DSKNIKVEGI TITNSPQIHI TFSDSQAIQA TDVVINSPES SPNTDGIHVS 180 GSTNVVVRDA DISAGDDCVS IVSGSSNIQV LGGRCGPGHG ISIGSLGKGG SYATVSNVQV 240 SGVKIDAATN GVRIKTWQGG KGYVSNVIFE NISMDNVKNP IIIDQNYCDG GCGKKRGSSL 300 TIQGVTYSNI VGTSASPDGI NLHCSSSGAC TNIHFSNVKL TLGSSGKAAG AVCENVQ 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-69 | 28 | 356 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 3.0e-69 | 1 | 357 | 366 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 1.0e-71 | 1 | 357 | 363 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 3.0e-79 | 1 | 353 | 360 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-79 | 2 | 355 | 359 | + polygalacturonase ADPG | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF71160.1 | 0 | 2 | 357 | 91 | 444 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
| EMBL | CBI24904.1 | 0 | 2 | 356 | 88 | 442 | unnamed protein product [Vitis vinifera] |
| Swiss-Prot | P35336 | 0 | 2 | 357 | 91 | 444 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| RefSeq | XP_002274775.1 | 0 | 2 | 356 | 81 | 435 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002529616.1 | 0 | 1 | 356 | 108 | 461 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 8e-29 | 98 | 341 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 3e-26 | 104 | 343 | 84 | 322 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 3e-26 | 104 | 343 | 84 | 322 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 3e-26 | 104 | 343 | 84 | 322 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 3e-26 | 104 | 343 | 84 | 322 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX340593 | 262 | 105 | 357 | 0 |
| FE647334 | 230 | 107 | 333 | 0 |
| EC945774 | 235 | 107 | 340 | 0 |
| EE091344 | 241 | 105 | 343 | 0 |
| EH773725 | 216 | 107 | 320 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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