| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 340560 |
| Family | CBM43 |
| Protein Properties | Length: 494 Molecular Weight: 54277.1 Isoelectric Point: 4.8315 |
| Chromosome | Chromosome/Scaffold: 3 Start: 1321509 End: 1324441 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 374 | 456 | 9e-26 |
| WCMFNPNGRGNMSSLGDNINYACSHSDCTALGYGSSCGNLDANGNASYAFNMYFQVQNQEAQACDFEGLATITTQNISQGECN | |||
| GH17 | 33 | 352 | 0 |
| LGVNWGTMATHQLPPKTVVEMLKDNNIQKVKLFDADTNTMGALAGSGVEVMVAIPNDLLQAMGNYQRAKDWVQRNVSRFNFNNGVKIKYVAVGNEPFLTA YNGSFINLIYPALFNIQTALNEAGVGDFTKATVPLNADVYNSPPDNQVPSAGRFRSDIIQEMTQIVNFLAQNKAPFTVNIYPFLSLYLSSDFPFDYAFFD GQNTVNDNGVVYTNVFDANFDTLLASLNALNHGNMEVIVGEVGWPTDGDKNANVQNAERFYSGLLPRLANNVGTPMRKGYIEVYLFGFIDEDVKSVAPGN FERHWGIFKFDGQPKFPVDF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 494 Download |
| MNHRPKQSAI TNSTGVFIII YALFFLSGGV SGLGVNWGTM ATHQLPPKTV VEMLKDNNIQ 60 KVKLFDADTN TMGALAGSGV EVMVAIPNDL LQAMGNYQRA KDWVQRNVSR FNFNNGVKIK 120 YVAVGNEPFL TAYNGSFINL IYPALFNIQT ALNEAGVGDF TKATVPLNAD VYNSPPDNQV 180 PSAGRFRSDI IQEMTQIVNF LAQNKAPFTV NIYPFLSLYL SSDFPFDYAF FDGQNTVNDN 240 GVVYTNVFDA NFDTLLASLN ALNHGNMEVI VGEVGWPTDG DKNANVQNAE RFYSGLLPRL 300 ANNVGTPMRK GYIEVYLFGF IDEDVKSVAP GNFERHWGIF KFDGQPKFPV DFRGQGQKKF 360 LTGAQNVQYL LNQWCMFNPN GRGNMSSLGD NINYACSHSD CTALGYGSSC GNLDANGNAS 420 YAFNMYFQVQ NQEAQACDFE GLATITTQNI SQGECNFPIQ IGEPSAGHYD YSYGSMVRLC 480 LVMSGLVFLL IAQ* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 2.0e-7 | 227 | 343 | 121 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 1.0e-18 | 373 | 444 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 4.0e-30 | 373 | 457 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 8.0e-72 | 36 | 352 | 321 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_176656.1 | 0 | 34 | 488 | 26 | 481 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_179534.1 | 0 | 30 | 466 | 18 | 453 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_187051.3 | 0 | 1 | 491 | 1 | 491 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_197323.1 | 0 | 1 | 486 | 1 | 488 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002277003.1 | 0 | 24 | 461 | 16 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 0 | 33 | 352 | 3 | 314 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 3ur8_A | 0 | 33 | 352 | 3 | 314 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 3ur7_B | 0 | 33 | 352 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 33 | 352 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 4gzj_A | 0 | 33 | 352 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
