| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 349416 |
| Family | GH5 |
| Protein Properties | Length: 449 Molecular Weight: 50616.3 Isoelectric Point: 6.6041 |
| Chromosome | Chromosome/Scaffold: 6 Start: 33640 End: 35344 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 58 | 392 | 1.4e-35 |
| NGQPFYVNGFNTYWMMTLAADNSTRGKVTEVFQQASAVGMTVGRTWAFNDGQWRALQKSPSVYDEEVFKALDFVVSEARKYKIRLILSLVNNWDAYGGKA QYVKWGNASGLNLTSDDDFFTNPTLRNFYQSHVRTVLNRVNTFTNITYKKDPTIFAWELMNEPRCPSDPSGDKLQSWIQEMAVFVKSLDAKHLVEIGLEG FYGPSAPVRTRFNPNPYAAQVGTDFIRNNQVLGIDFASVHVYPDSWISPAVSNSFLEFTSSWMQAHVEDAEMYLGMPVLFTEFGVSAHDPGFNTSFRDMM LNTVYKMTLNSTRKGGAGAGSLVWQVFPQGAEFMD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 449 Download |
| MKDQLGFRIV LCSAIFIILT QNRALADLDS ESHGVNSESV GEEEWEMVQR KGMQFTLNGQ 60 PFYVNGFNTY WMMTLAADNS TRGKVTEVFQ QASAVGMTVG RTWAFNDGQW RALQKSPSVY 120 DEEVFKALDF VVSEARKYKI RLILSLVNNW DAYGGKAQYV KWGNASGLNL TSDDDFFTNP 180 TLRNFYQSHV RTVLNRVNTF TNITYKKDPT IFAWELMNEP RCPSDPSGDK LQSWIQEMAV 240 FVKSLDAKHL VEIGLEGFYG PSAPVRTRFN PNPYAAQVGT DFIRNNQVLG IDFASVHVYP 300 DSWISPAVSN SFLEFTSSWM QAHVEDAEMY LGMPVLFTEF GVSAHDPGFN TSFRDMMLNT 360 VYKMTLNSTR KGGAGAGSLV WQVFPQGAEF MDDGYAVYLT RAHTASKIIS LQSKRLAIFN 420 SLCSWRCRWG CKKKNHTALD ALLTHDEL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG2730 | BglC | 0.003 | 101 | 299 | 204 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
| pfam00150 | Cellulase | 1.0e-5 | 58 | 352 | 305 | + Cellulase (glycosyl hydrolase family 5). | ||
| COG3934 | COG3934 | 3.0e-24 | 50 | 389 | 343 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI18019.1 | 0 | 4 | 448 | 7 | 471 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_195813.1 | 0 | 1 | 448 | 1 | 448 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002273389.1 | 0 | 41 | 448 | 5 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002323680.1 | 0 | 40 | 448 | 10 | 414 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528703.1 | 0 | 42 | 448 | 68 | 473 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 48 | 417 | 7 | 370 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 0 | 57 | 395 | 22 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 0 | 57 | 395 | 22 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 0 | 57 | 395 | 22 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 0 | 57 | 395 | 22 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
