| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 351455 |
| Family | CBM43 |
| Protein Properties | Length: 444 Molecular Weight: 48996.6 Isoelectric Point: 5.5622 |
| Chromosome | Chromosome/Scaffold: 6 Start: 10570894 End: 10572565 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 358 | 440 | 8.1e-30 |
| WCVTKAGAETVALQRNIDYVCGLGLDCRPINEGGLCFLPNTVKAHSEYAMNLYYQTMEKHEFDCDFDNTGEITTIDPSYGNCE | |||
| GH17 | 16 | 330 | 0 |
| IGVNYGTLANNLPPPQQVAEFLLHSTVINRIRLFDTDPHILQAFANTGIAITVTVPNDQIPHLTNLSSAKQWISDQIQPHFPSTNIIRILVGNEVISTAN HLLIRTLIPAMQSLHTALVSTSLHRRIQISTPHSLGILTNTTPPSSAKFRRGYDTNVLKPLLSFLRSTSSPFVVNPYPFFGYSIETLDFALFRPNPGLFD QHPKLLYTNMLDAQLDSVYSAMDKLGFSDVEIVIGEIGWPSEGDIDQIGVDVATAAEFNKNVVTRVNSGTGTPLMPNRTFETYIFALFNENLKSGPTSER NFGIFRSDLTPIYDI | |||
| Full Sequence |
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| Protein Sequence Length: 444 Download |
| MAGLLIIFST GAEASIGVNY GTLANNLPPP QQVAEFLLHS TVINRIRLFD TDPHILQAFA 60 NTGIAITVTV PNDQIPHLTN LSSAKQWISD QIQPHFPSTN IIRILVGNEV ISTANHLLIR 120 TLIPAMQSLH TALVSTSLHR RIQISTPHSL GILTNTTPPS SAKFRRGYDT NVLKPLLSFL 180 RSTSSPFVVN PYPFFGYSIE TLDFALFRPN PGLFDQHPKL LYTNMLDAQL DSVYSAMDKL 240 GFSDVEIVIG EIGWPSEGDI DQIGVDVATA AEFNKNVVTR VNSGTGTPLM PNRTFETYIF 300 ALFNENLKSG PTSERNFGIF RSDLTPIYDI GILRPTFRSS NPENNTATPV RASPEKRWCV 360 TKAGAETVAL QRNIDYVCGL GLDCRPINEG GLCFLPNTVK AHSEYAMNLY YQTMEKHEFD 420 CDFDNTGEIT TIDPSYGNCE YQA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.007 | 229 | 323 | 98 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-17 | 357 | 427 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-36 | 358 | 441 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-90 | 16 | 330 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI23036.1 | 0 | 6 | 441 | 14 | 458 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_001031936.1 | 0 | 10 | 443 | 24 | 457 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_001119271.1 | 0 | 10 | 435 | 24 | 449 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | XP_002318439.1 | 0 | 11 | 441 | 27 | 463 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526252.1 | 0 | 11 | 435 | 26 | 466 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 0 | 16 | 330 | 3 | 312 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3ur8_A | 0 | 16 | 330 | 3 | 312 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3ur7_B | 0 | 16 | 330 | 3 | 312 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 16 | 330 | 3 | 312 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 4gzj_A | 0 | 16 | 330 | 3 | 312 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EG486112 | 299 | 42 | 340 | 0 |
| EG484766 | 301 | 86 | 386 | 0 |
| EG484762 | 298 | 11 | 308 | 0 |
| EG504152 | 294 | 135 | 428 | 0 |
| EG486112 | 33 | 341 | 373 | 0.0002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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