| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 353036 |
| Family | PL4 |
| Protein Properties | Length: 667 Molecular Weight: 76499.7 Isoelectric Point: 9.6755 |
| Chromosome | Chromosome/Scaffold: 7 Start: 967568 End: 971607 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL4 | 51 | 647 | 0 |
| TREVIVDNGIIRVSFSNPQGLVTGIKYKGIDNVLHPHLRARGYWDITWQGTNIRQGGLDRIEGTKFRIITQTQEQVEISFSRTWEDGHIPLNVDKRYIIR RNTSGIYMYGIFERLPEWPELDMGLIRIAFKLNPDRFHYMAVADNRQREMPTEDDRDIERGHAKVLGYKEAVQLTHPHNSMFKNQVDDKYQYTCEIKDNK VHGWISTKSRVGFWIISPSGEYRSGGPIKQELTSHVGPTAITTFISGHYVGADMEAHYRPGEAWKKVLGPVFIYLNSDSTGNNPPQDLLWEDAKQQTEKE VKAWPYEFVASSDFLSRRERGIVTGRLLVNDRFLTPGKSAYVGLAPPGEAGSWQTNTKGYQFWTKTNETGYFTIENVRPGTYNLYGWVPGFIGDFRYQNR VNVAAGSHISLGRVVYQPPRNGPTLWEIGVPDRTAREFFIPEPYKNTMNPYLNHTDKFRQYGLWQRYTELYPTHDLVYTVGASNYSQDWFYAQVTRKTGD LTYVPTTWQIVFHLPYVNWQGGYTLQLALASAARANLQVRINTQNSWPFFSTGNIGKDNAIARHGIHGMYRLYSINVPGRLLRTGTNTIYLRQAKAT | |||
| Full Sequence |
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| Protein Sequence Length: 667 Download |
| MVLQKKIASL IICFLLLLLL PLSFSKPTRN LDGISARAPT VQQIRNRHHG TREVIVDNGI 60 IRVSFSNPQG LVTGIKYKGI DNVLHPHLRA RGYWDITWQG TNIRQGGLDR IEGTKFRIIT 120 QTQEQVEISF SRTWEDGHIP LNVDKRYIIR RNTSGIYMYG IFERLPEWPE LDMGLIRIAF 180 KLNPDRFHYM AVADNRQREM PTEDDRDIER GHAKVLGYKE AVQLTHPHNS MFKNQVDDKY 240 QYTCEIKDNK VHGWISTKSR VGFWIISPSG EYRSGGPIKQ ELTSHVGPTA ITTFISGHYV 300 GADMEAHYRP GEAWKKVLGP VFIYLNSDST GNNPPQDLLW EDAKQQTEKE VKAWPYEFVA 360 SSDFLSRRER GIVTGRLLVN DRFLTPGKSA YVGLAPPGEA GSWQTNTKGY QFWTKTNETG 420 YFTIENVRPG TYNLYGWVPG FIGDFRYQNR VNVAAGSHIS LGRVVYQPPR NGPTLWEIGV 480 PDRTAREFFI PEPYKNTMNP YLNHTDKFRQ YGLWQRYTEL YPTHDLVYTV GASNYSQDWF 540 YAQVTRKTGD LTYVPTTWQI VFHLPYVNWQ GGYTLQLALA SAARANLQVR INTQNSWPFF 600 STGNIGKDNA IARHGIHGMY RLYSINVPGR LLRTGTNTIY LRQAKATGPF EGLMYDYIRL 660 EEPSRD* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13620 | CarboxypepD_reg | 0.0008 | 414 | 461 | 48 | + Carboxypeptidase regulatory-like domain. | ||
| cd10316 | RGL4_M | 2.0e-32 | 369 | 462 | 94 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 1.0e-52 | 476 | 661 | 188 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 5.0e-77 | 44 | 330 | 292 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-91 | 23 | 236 | 219 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
