Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 353449 |
Family | GH10 |
Protein Properties | Length: 571 Molecular Weight: 64985.1 Isoelectric Point: 9.1332 |
Chromosome | Chromosome/Scaffold: 7 Start: 3099865 End: 3102349 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 210 | 472 | 0 |
QTKSSFLLGCGMNFRILQSQGYRKWFASRFKITSFTNEMKWYATEKARGQENYTVADSMLKFAEDNGILVRGHTVLWDNPRMQPSWVKKINNPEDVMNVT LNRINSVMKRYKGKLTGWDVVNENLHWDYFEKMLGENASSRFYNMASKIDPDVRLFVNEYNTIENPKEFTATPIKVKKKMEEILAYPGNKNIKGAIGVQG HFGPTQPNLAYIRSALDTLGSLRFPIWLTELDIPKCPNQAKYMEDILREAYSHPAVKGIIIFG |
Full Sequence |
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Protein Sequence Length: 571 Download |
MNSIKNGFFL CMLSLLWCLV DSRISTDPFS HSHSLNTECV MKPPQSSETQ GLLQFSRSVE 60 ADSGEEWKID GNGAIREMAQ RIQLHQGNIY SFSAWVKLRE GNDKKVGVVF RTENGRLVHG 120 GEVRAKQGCW TLLKGGIVPD FSGPVDIFFE SENREAKISA NNVLLKQFSK DEWKLKQDQL 180 IEKIRKSKVR FEVTYQNKTA VKGAVISLKQ TKSSFLLGCG MNFRILQSQG YRKWFASRFK 240 ITSFTNEMKW YATEKARGQE NYTVADSMLK FAEDNGILVR GHTVLWDNPR MQPSWVKKIN 300 NPEDVMNVTL NRINSVMKRY KGKLTGWDVV NENLHWDYFE KMLGENASSR FYNMASKIDP 360 DVRLFVNEYN TIENPKEFTA TPIKVKKKME EILAYPGNKN IKGAIGVQGH FGPTQPNLAY 420 IRSALDTLGS LRFPIWLTEL DIPKCPNQAK YMEDILREAY SHPAVKGIII FGGPEVSGFD 480 KLTLADKNFN NTQTGDVIDK LLKEWQQKSS EIRTIFTADS GNEEEEISLL HGHYNVNVSH 540 PWIENLSNSF SLEVTKEMGQ HQVVRVGFNA * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 4.0e-35 | 246 | 472 | 247 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-54 | 207 | 490 | 306 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 7.0e-89 | 248 | 498 | 272 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA19864.1 | 0 | 41 | 537 | 1 | 513 | putative protein [Arabidopsis thaliana] |
EMBL | CAB80099.1 | 0 | 41 | 570 | 1 | 546 | putative protein [Arabidopsis thaliana] |
RefSeq | NP_179076.3 | 0 | 27 | 570 | 28 | 570 | endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | NP_195107.1 | 0 | 41 | 570 | 1 | 536 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
RefSeq | NP_680761.1 | 0 | 1 | 570 | 1 | 570 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1tux_A | 1e-29 | 178 | 502 | 7 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1x_A | 7e-27 | 217 | 490 | 27 | 289 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1w_A | 7e-27 | 217 | 490 | 27 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 2e-26 | 178 | 490 | 7 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1k6a_A | 3e-26 | 217 | 490 | 27 | 289 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |