| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 353450 |
| Family | GH10 |
| Protein Properties | Length: 569 Molecular Weight: 64773.9 Isoelectric Point: 5.7855 |
| Chromosome | Chromosome/Scaffold: 7 Start: 3104549 End: 3107288 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH10 | 210 | 470 | 0 |
| TKPSFLLGCAMNFRILQSEGYRNWFASRFKITSFTNEMKWYTTEKERGQENYTAADSMLKFAEENGILVRGHTVLWDDPIMQPSWVQKIKDPNDLMNVTL NRINSVMTRYKGKLTGWDVVNENVHWDYFEKMLGANASSIFYNLAFKLDPDLTLFVNEYNTIENRVEVTATPVKVKEKMEEILAYPGNMNIKGAIGAQGH FRPTQPNLAYMRSALDTLGSLGLPIWLTELDMPKCPNQEIYIEEILREAYSHPAVKGIIIF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 569 Download |
| MKNINNGFFL CMLLLLWCFV HSGISIDPFS QSDSLKTECV MKPPRSSETQ GLLQFSRSVE 60 ADSDEEWKID ENGSIREMTQ RIQLQQGNIY SFSAWVKLRE GNKKKVGVVF RTENGVVHGG 120 EVRAKQGCWT LLKGGIVPDV SGSVDIFFET DDKEAKISAS DVSLKQFSKE EWKLKQDQLI 180 EKIRKSKVRF EVTYQNKTAV KGAVISIEQT KPSFLLGCAM NFRILQSEGY RNWFASRFKI 240 TSFTNEMKWY TTEKERGQEN YTAADSMLKF AEENGILVRG HTVLWDDPIM QPSWVQKIKD 300 PNDLMNVTLN RINSVMTRYK GKLTGWDVVN ENVHWDYFEK MLGANASSIF YNLAFKLDPD 360 LTLFVNEYNT IENRVEVTAT PVKVKEKMEE ILAYPGNMNI KGAIGAQGHF RPTQPNLAYM 420 RSALDTLGSL GLPIWLTELD MPKCPNQEIY IEEILREAYS HPAVKGIIIF AGPEVSGFDK 480 LTLADKDFNN TATGDVIDSL LKEWQQSSEI PKIFMKDSEN DEEEVSLLHG YYNVNVSHTW 540 MKNMSTSFSL EVTKEMGQRQ VVRVVINA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 2.0e-32 | 245 | 441 | 209 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 9.0e-52 | 211 | 467 | 283 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 6.0e-85 | 247 | 497 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA19864.1 | 0 | 41 | 535 | 1 | 513 | putative protein [Arabidopsis thaliana] |
| EMBL | CAB80099.1 | 0 | 41 | 568 | 1 | 546 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_179076.3 | 0 | 1 | 568 | 1 | 570 | endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_195107.1 | 0 | 41 | 568 | 1 | 536 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | NP_680761.1 | 0 | 1 | 568 | 1 | 570 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1tux_A | 2e-29 | 177 | 441 | 7 | 240 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1x_A | 8e-29 | 245 | 441 | 47 | 240 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1w_A | 8e-29 | 245 | 441 | 47 | 240 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 1e-28 | 245 | 441 | 47 | 240 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1k6a_A | 2e-28 | 245 | 441 | 47 | 240 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
