Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 358371 |
Family | CE8 |
Protein Properties | Length: 339 Molecular Weight: 37306.5 Isoelectric Point: 9.3459 |
Chromosome | Chromosome/Scaffold: 8 Start: 20134459 End: 20136012 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 44 | 327 | 0 |
NVKQNGRGHFKTITEAINSVRAGNTRRVIIKIGPGVYKEKVTIDRNKPFITLYGHPNAMPVLTFDGTAAQYGTVDSATLIVLSDYFMAVNIIVKNSAPMP DGKRKGAQALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFKDCYIEGTFDFIFGSGRSLYLGTQLNVVGDGIRVITAHAGKSAAEKSGYSFVHCKVTG TGTGIYLGRAWMSHPKVVYAYTDMSSVVNPSGWQENREAGRDKTVFYGEYKCTGTGSHKEKRVKYTQDIDDVEAKYFISLGYIQ |
Full Sequence |
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Protein Sequence Length: 339 Download |
MGYNYVSLIV TILLVVITSP VVFGNDAAPI PENKGRIEQW FNTNVKQNGR GHFKTITEAI 60 NSVRAGNTRR VIIKIGPGVY KEKVTIDRNK PFITLYGHPN AMPVLTFDGT AAQYGTVDSA 120 TLIVLSDYFM AVNIIVKNSA PMPDGKRKGA QALSMRISGN KAAFYNCKFY GYQDTICDDT 180 GNHFFKDCYI EGTFDFIFGS GRSLYLGTQL NVVGDGIRVI TAHAGKSAAE KSGYSFVHCK 240 VTGTGTGIYL GRAWMSHPKV VYAYTDMSSV VNPSGWQENR EAGRDKTVFY GEYKCTGTGS 300 HKEKRVKYTQ DIDDVEAKYF ISLGYIQGSS WLLPPPSF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 1.0e-80 | 45 | 334 | 298 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 4.0e-86 | 45 | 334 | 299 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-86 | 45 | 332 | 288 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-101 | 46 | 334 | 296 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 23 | 338 | 343 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG52566.1 | 0 | 21 | 338 | 1 | 338 | AC010675_14 putative pectin methylesterase; 8433-9798 [Arabidopsis thaliana] |
DDBJ | BAB09012.1 | 0 | 1 | 338 | 1 | 364 | pectin methylesterase-like protein [Arabidopsis thaliana] |
RefSeq | NP_177152.2 | 0 | 1 | 338 | 1 | 361 | PPME1; pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_200976.1 | 0 | 1 | 338 | 1 | 338 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_568181.1 | 0 | 1 | 338 | 1 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 5e-33 | 42 | 332 | 4 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 8e-33 | 42 | 332 | 8 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1qjv_B | 3e-19 | 53 | 316 | 18 | 327 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 3e-19 | 53 | 316 | 18 | 327 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 4e-19 | 53 | 316 | 18 | 327 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |