PlantCAZyme

Basic Information
Species	Ricinus communis
Cazyme ID	35902.m000018
Family	GH3
Protein Properties	Length: 578 Molecular Weight: 62238.9 Isoelectric Point: 6.64
Chromosome	Chromosome/Scaffold: 35902 Start: 19 End: 1752
Description	beta-xylosidase 2
View CDS

External Links
NCBI Taxonomy
Plaza
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH3	77	306	0
VEQTRLGISLFMHEEALHGYVARDATSFPQAIGIASSFDPDLTTKIFSVAAREMRARGANLALAPVVDVAREPRWGRIEETYGEDPYLCGEIGKAAIIGF AGTDPKLPKDKVLVTLKHMTGHGQPESGTNIGPAEVSERTLREEFFPPFEKAIKEANVGCVMPSYNEIGGVPSHANHWLLHKVLREEWGFKGITVSDYFG INELITRHKLAATPKEAALRAIKAGVDVET

Full Sequence
Protein Sequence Length: 578 Download
RSPRCSALAS KTEIQDAKGE FVAAKAQKVY PHGLGMIGRP SDRQLGQAAG AGDTGAQANR 60 NALETATYVN AVQKWAVEQT RLGISLFMHE EALHGYVARD ATSFPQAIGI ASSFDPDLTT 120 KIFSVAAREM RARGANLALA PVVDVAREPR WGRIEETYGE DPYLCGEIGK AAIIGFAGTD 180 PKLPKDKVLV TLKHMTGHGQ PESGTNIGPA EVSERTLREE FFPPFEKAIK EANVGCVMPS 240 YNEIGGVPSH ANHWLLHKVL REEWGFKGIT VSDYFGINEL ITRHKLAATP KEAALRAIKA 300 GVDVETPDGL AYKTLGELVK EKRVSEAEID TVVRRILTLK FQLGLFENPY VDAKAADNLT 360 ATPDAVALAR LAATRTPVLL KNDKGLLPLD GKKVGKVLLI GTHAKDTPIG GYSDHPRHVV 420 SIHDGLQAEA KAQGFSLAYS EGVRITESRV WGADEIKFTA PEVNARLIAD AVAAAKSADT 480 IIMVLGDNEQ TSREAWADNH LGDRESLDLM GQQNDLARAI FALGKPTVVF LLNGRPLSIN 540 LLAEKADAII EGWYMGQETG NAAADLLFGR ANPGGKLP 600

Full Sequence

Protein Sequence Length: 578 Download

RSPRCSALAS KTEIQDAKGE FVAAKAQKVY PHGLGMIGRP SDRQLGQAAG AGDTGAQANR    60
NALETATYVN AVQKWAVEQT RLGISLFMHE EALHGYVARD ATSFPQAIGI ASSFDPDLTT    120
KIFSVAAREM RARGANLALA PVVDVAREPR WGRIEETYGE DPYLCGEIGK AAIIGFAGTD    180
PKLPKDKVLV TLKHMTGHGQ PESGTNIGPA EVSERTLREE FFPPFEKAIK EANVGCVMPS    240
YNEIGGVPSH ANHWLLHKVL REEWGFKGIT VSDYFGINEL ITRHKLAATP KEAALRAIKA    300
GVDVETPDGL AYKTLGELVK EKRVSEAEID TVVRRILTLK FQLGLFENPY VDAKAADNLT    360
ATPDAVALAR LAATRTPVLL KNDKGLLPLD GKKVGKVLLI GTHAKDTPIG GYSDHPRHVV    420
SIHDGLQAEA KAQGFSLAYS EGVRITESRV WGADEIKFTA PEVNARLIAD AVAAAKSADT    480
IIMVLGDNEQ TSREAWADNH LGDRESLDLM GQQNDLARAI FALGKPTVVF LLNGRPLSIN    540
LLAEKADAII EGWYMGQETG NAAADLLFGR ANPGGKLP                            600

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
pfam01915	Glyco_hydro_3_C	3.0e-43	381	578	202	+ Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933.
PLN03080	PLN03080	9.0e-54	81	578	539	+ Probable beta-xylosidase; Provisional
pfam00933	Glyco_hydro_3	9.0e-89	69	339	276	+ Glycosyl hydrolase family 3 N terminal domain.
COG1472	BglX	3.0e-95	60	433	380	+ Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
PRK15098	PRK15098	9.0e-109	65	578	530	+ beta-D-glucoside glucohydrolase; Provisional

Gene Ontology
GO Term	Description
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975	carbohydrate metabolic process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	ACN58869.1	0	11	578	69	636	xylosidase/arabinosidase [uncultured bacterium BLR13]
RefSeq	NP_421848.1	0	10	578	75	648	xylosidase/arabinosidase [Caulobacter crescentus CB15]
RefSeq	XP_002536229.1	0	1	578	1	578	Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
RefSeq	ZP_04769381.1	0	11	578	68	636	glycoside hydrolase family 3 domain protein [Asticcacaulis excentricus CB 48]
RefSeq	ZP_06121777.1	0	10	578	75	648	glycoside hydrolase family 3 domain protein [Caulobacter segnis ATCC 21756]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	3u48_B	0	38	577	34	565	A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558.
PDB	3u48_A	0	38	577	34	565	A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558.
PDB	3u4a_B	0	38	577	34	565	A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558.
PDB	3u4a_A	0	38	577	34	565	A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558.
PDB	2x41_A	0	101	578	78	544	A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558.

EST Download unfiltered results here

Hit	Length	Start	End	EValue
CV529963	298	69	348	4.00001e-40
ES866687	294	69	349	1e-39
EL455042	312	59	357	7e-38
GR460798	238	70	304	4e-37
ES271635	238	70	304	5e-37

Orthologous Group
Species	ID
Aquilegia coerulea	Aquca_017_00063.2	Aquca_017_00063.1	Aquca_014_00481.1	Aquca_069_00035.1	Aquca_003_00570.1
	Aquca_014_00481.2	Aquca_009_01003.1	Aquca_033_00044.1	Aquca_033_00043.1	Aquca_011_00469.1
	Aquca_068_00054.2	Aquca_068_00054.1	Aquca_093_00018.1	Aquca_093_00013.1	Aquca_069_00035.2
	Aquca_093_00014.1	Aquca_093_00019.1	Aquca_047_00018.1	Aquca_069_00063.1
Arabidopsis lyrata	470222	895698	917917	325518	496670
	487889	318716
Arabidopsis thaliana	AT1G02640.1	AT3G19620.1	AT1G78060.1	AT5G49360.1	AT5G09730.1
	AT5G64570.1	AT5G10560.1
Brachypodium distachyon	Bradi2g48457.1	Bradi3g59020.1	Bradi5g23470.1	Bradi4g20240.1	Bradi5g16557.1
	Bradi4g16026.1	Bradi4g20197.1	Bradi4g27697.1	Bradi2g11410.1
Brassica rapa	Bra033337	Bra015636	Bra024311	Bra031912	Bra020646
	Bra037782	Bra010038	Bra004202	Bra036143	Bra009023
	Bra022440
Carica papaya	evm.model.supercontig_66.79	evm.model.supercontig_18.25	evm.model.supercontig_0.14	evm.model.supercontig_106.54	evm.model.supercontig_1071.2
	evm.model.supercontig_489.8	evm.model.supercontig_166.31	evm.model.supercontig_166.29	evm.model.supercontig_129.18	evm.TU.contig_33237.2
Capsella rubella	Carubv10008371m	Carubv10015075m	Carubv10019845m	Carubv10022420m	Carubv10025920m
	Carubv10025915m	Carubv10000252m	Carubv10008583m
Chlamydomonas reinhardtii	g4372.t2	g4372.t1
Citrus clementina	Ciclev10027856m	Ciclev10000352m	Ciclev10000355m	Ciclev10018959m	Ciclev10004369m
	Ciclev10024911m	Ciclev10018262m	Ciclev10014325m	Ciclev10018058m	Ciclev10014315m
	Ciclev10017977m
Citrus sinensis	orange1.1g003980m	orange1.1g007737m	orange1.1g004054m	orange1.1g008175m	orange1.1g004190m
	orange1.1g003606m	orange1.1g038581m	orange1.1g047862m	orange1.1g040836m	orange1.1g003876m
	orange1.1g006224m	orange1.1g014083m	orange1.1g006889m	orange1.1g006866m	orange1.1g006863m
	orange1.1g010408m	orange1.1g047621m	orange1.1g007089m	orange1.1g005782m
Cucumis sativus	Cucsa.205100.1	Cucsa.345770.1	Cucsa.154540.1	Cucsa.325260.1	Cucsa.096780.1
	Cucsa.047580.1	Cucsa.103770.1	Cucsa.345770.2
Eucalyptus grandis	Eucgr.F02441.1	Eucgr.H04033.2	Eucgr.H04033.1	Eucgr.H01055.1	Eucgr.G00649.1
	Eucgr.G00651.1	Eucgr.G00653.1	Eucgr.G00650.1	Eucgr.D00316.1	Eucgr.I01067.1
	Eucgr.B01815.1	Eucgr.H02409.1	Eucgr.G00654.1	Eucgr.F02442.1
Fragaria vesca	mrna22107.1-v1.0-hybrid	mrna05562.1-v1.0-hybrid	mrna25563.1-v1.0-hybrid	mrna05164.1-v1.0-hybrid	mrna16059.1-v1.0-hybrid
	mrna02314.1-v1.0-hybrid	mrna16004.1-v1.0-hybrid	mrna30561.1-v1.0-hybrid
Glycine max	Glyma20g27011.1	Glyma10g01710.1	Glyma13g01950.1	Glyma03g37710.1	Glyma02g01660.1
	Glyma19g40300.1	Glyma14g34480.1	Glyma06g11040.1	Glyma09g33580.1	Glyma09g04337.2
	Glyma09g04337.1	Glyma08g19280.1	Glyma15g05720.1	Glyma08g07950.1	Glyma15g15370.2
	Glyma15g15370.1	Glyma05g24811.1	Glyma19g40300.2
Gossypium raimondii	Gorai.005G093200.2	Gorai.005G093200.1	Gorai.009G239100.1	Gorai.005G093300.1	Gorai.012G147500.1
	Gorai.008G140600.1	Gorai.002G219200.1	Gorai.002G219200.2	Gorai.012G140300.1	Gorai.007G230000.1
	Gorai.009G282000.2	Gorai.009G282000.1	Gorai.001G143600.1	Gorai.002G219100.1	Gorai.005G218000.1
	Gorai.011G198200.1	Gorai.006G259500.2	Gorai.006G259500.1	Gorai.005G218000.3	Gorai.009G282000.3
	Gorai.002G219200.3
Linum usitatissimum	Lus10022374	Lus10019099	Lus10010015	Lus10020966	Lus10004271
	Lus10016858	Lus10007775	Lus10037728
Malus domestica	MDP0000608429	MDP0000298527	MDP0000174676	MDP0000121374	MDP0000450710
	MDP0000156778	MDP0000162509	MDP0000140483	MDP0000197977	MDP0000697764
	MDP0000231809	MDP0000200256	MDP0000191417	MDP0000407622	MDP0000165135
	MDP0000174004	MDP0000321928	MDP0000220923	MDP0000156321	MDP0000156045
	MDP0000287981	MDP0000268143
Manihot esculenta	cassava4.1_032291m	cassava4.1_025638m	cassava4.1_002149m	cassava4.1_033980m	cassava4.1_002121m
	cassava4.1_031387m	cassava4.1_002077m	cassava4.1_001960m	cassava4.1_022073m	cassava4.1_003704m
Medicago truncatula	CU651566_10.1	Medtr1g106860.1	Medtr1g087240.1	Medtr7g109390.1	Medtr5g062430.1
	Medtr5g062650.1	Medtr5g062320.1	Medtr5g030860.1	Medtr2g034720.1	Medtr2g008240.1
	Medtr5g062370.1	Medtr5g062570.1
Mimulus guttatus	mgv1a001688m	mgv1a001753m	mgv1a001417m	mgv1a001636m	mgv1a001678m
	mgv1a018879m	mgv1a019840m	mgv1a001695m	mgv1a021704m	mgv1a025071m
	mgv1a018779m	mgv1a001598m	mgv1a001738m	mgv1a001685m	mgv1a020334m
	mgv1a001665m	mgv1a001709m	mgv1a002957m	mgv1a018473m	mgv1a001559m
	mgv1a001867m	mgv1a002689m	mgv1a002754m	mgv1a024762m	mgv1a004253m
	mgv1a020757m
Oryza sativa	LOC_Os02g51620.1	LOC_Os11g44950.2	LOC_Os11g19210.1	LOC_Os04g54810.1	LOC_Os11g19160.1
	LOC_Os04g44840.1	LOC_Os11g18730.1	LOC_Os01g19220.1	LOC_Os11g18690.1	LOC_Os11g47350.1
	LOC_Os11g44950.1
Panicum virgatum	Pavirv00047686m	Pavirv00033556m	Pavirv00024100m	Pavirv00036845m	Pavirv00061381m
	Pavirv00008674m	Pavirv00037692m	Pavirv00015197m	Pavirv00015196m	Pavirv00016759m
	Pavirv00066354m	Pavirv00035440m	Pavirv00005511m	Pavirv00036846m	Pavirv00046032m
	Pavirv00012516m	Pavirv00024941m	Pavirv00018921m
Physcomitrella patens	Pp1s196_21V6.2	Pp1s196_21V6.1	Pp1s406_3V6.1	Pp1s8031_1V6.1
Phaseolus vulgaris	Phvul.009G029300.1	Phvul.008G153300.1	Phvul.009G254300.1	Phvul.001G212100.1	Phvul.002G206800.1
	Phvul.007G215100.1	Phvul.006G208200.1	Phvul.002G142900.1
Picea abies	MA_99945g0010	MA_4577g0010	MA_182289g0010	MA_102349g0010	MA_10426142g0010
	MA_140124g0010	MA_249055g0010	MA_77922g0010	MA_102783g0010	MA_261256g0010
	MA_10436568g0020	MA_161425g0010	MA_180495g0010	MA_7037g0010	MA_791061g0010
	MA_39151g0010	MA_208144g0010	MA_10391505g0010	MA_174653g0010	MA_2210771g0010
	MA_10430067g0010.144.215	MA_10430067g0010.144.215
Populus trichocarpa	Potri.001G294700.1	Potri.005G168500.1	Potri.002G197200.1	Potri.002G093900.1	Potri.002G094000.4
	Potri.002G094000.3	Potri.002G094000.2	Potri.002G094000.1	Potri.001G206800.2	Potri.014G122200.1
	Potri.010G141400.2	Potri.010G141400.1	Potri.001G089100.1	Potri.002G093900.2	Potri.001G089100.2
	Potri.001G206800.1	Potri.003G022900.1	Potri.008G108100.1	Potri.005G168400.1	Potri.014G122200.2
	Potri.007G114300.1	Potri.001G354200.1	Potri.003G022900.2	Potri.014G122200.3	Potri.002G094000.5
	Potri.001G089100.3	Potri.009G088800.1
Prunus persica	ppa015037m	ppa001583m	ppa001656m	ppa001675m	ppa001718m
	ppa001692m	ppa023763m
Ricinus communis	28152.m000917	30076.m004675	29889.m003265	30221.m002222	29908.m006002
	28333.m000555	29693.m002045	29908.m005997	40979.m000013	30381.m000024
	28740.m000028	33434.m000014
Setaria italica	Si016356m	Si009432m	Si027450m	Si009427m	Si026003m
	Si026007m	Si000314m	Si028069m	Si026099m
Selaginella moellendorffii	103038	80102	112087	419541
Sorghum bicolor	Sb04g027700.1	Sb05g026400.1	Sb06g030270.1	Sb0010s012040.1	Sb06g023450.1
	Sb0010s010920.1	Sb0010s007570.1	Sb03g012290.1	Sb10g020500.1
Thellungiella halophila	Thhalv10022061m	Thhalv10006876m	Thhalv10018160m	Thhalv10003681m	Thhalv10003678m
	Thhalv10012739m	Thhalv10012725m
Vitis vinifera	GSVIVT01028104001	GSVIVT01009003001.744.996	GSVIVT01009003001.744.996	GSVIVT01009003001.76.329	GSVIVT01009003001.76.329
	GSVIVT01037844001	GSVIVT01013328001	GSVIVT01022541001	GSVIVT01006776001	GSVIVT01035033001
	GSVIVT01017659001	GSVIVT01017658001	GSVIVT01017660001	GSVIVT01013347001	GSVIVT01029802001
	GSVIVT01021413001	GSVIVT01017656001	GSVIVT01020198001
Zea mays	AC234091.1_FGT001

CAZyme Information