y
Basic Information | |
---|---|
Species | Arabidopsis lyrata |
Cazyme ID | 359365 |
Family | GT47 |
Protein Properties | Length: 708 Molecular Weight: 82490.4 Isoelectric Point: 6.9816 |
Chromosome | Chromosome/Scaffold: 146 Start: 12419 End: 14677 |
Description | Exostosin family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GT47 | 276 | 615 | 0 |
CKGKYVYMHEVPALFNEELLKNCWTLSRWTDMCELTSNFGLGPRLPNMEGVSGWYATNQFTLEVIFHNRMKQYKCLTKDSSLASAVYVPYYPGLDLMRFL WGPFPFMRDAAALDLMKWLRESPEWKRMDGRDHFMVAGRTTWDFMRTPENESDWGNRLMILPEVRNMTMLLIESSPWNYHGFAVPYPTYFHPSTYAEIIQ WQMRMRRINRRYLFSFVGAPRPNLGDSIRTEIMDQCKASTRKCKLLECVSGSQKCYKPDQIMKFFLSSTFCLQPPGDSYTRRSTFDSILAGCIPVFFHPG SAYAQYIWHLPKDIAKYSVFIPEKNVKEGKVSIENVLSRI |
Full Sequence |
---|
Protein Sequence Length: 708 Download |
MAMEKSSSKY RTQFWYVAMA SFLLWLVLLY LSSSSAKTVH NHARLFRQEN VIDLPIENVP 60 QNHESDEAPV VVSEDISVDN SSLPVSVDIS PDDQMSEDKK VVTDLVEELE KERVENEKKR 120 VDSVITIGRS SRARRGHREP RKARSSGRLE AEKKKVRQKD DDESNVENSD ENHQALDKEP 180 NFFEPRKDVE PKKAQVDDND DDLESKRGKE LPNDLSSDDV EDDNTSEPEP KTQRKFSSNN 240 NNNSEAKNRV ISKRNQPKRV GKVMLRPRET RSNDPCKGKY VYMHEVPALF NEELLKNCWT 300 LSRWTDMCEL TSNFGLGPRL PNMEGVSGWY ATNQFTLEVI FHNRMKQYKC LTKDSSLASA 360 VYVPYYPGLD LMRFLWGPFP FMRDAAALDL MKWLRESPEW KRMDGRDHFM VAGRTTWDFM 420 RTPENESDWG NRLMILPEVR NMTMLLIESS PWNYHGFAVP YPTYFHPSTY AEIIQWQMRM 480 RRINRRYLFS FVGAPRPNLG DSIRTEIMDQ CKASTRKCKL LECVSGSQKC YKPDQIMKFF 540 LSSTFCLQPP GDSYTRRSTF DSILAGCIPV FFHPGSAYAQ YIWHLPKDIA KYSVFIPEKN 600 VKEGKVSIEN VLSRIPRTKI FAMREQVIRL IPRLMYFNPS SKSEDTGRFE DAFDVAVEGV 660 LERVEGLRKR IEEGKEEIFD FPEQYSWKYN VFGNVERHEW DPYFDRP* 720 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-67 | 275 | 615 | 354 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACY08857.1 | 0 | 253 | 707 | 125 | 591 | xyloglucan galactosyltransferase [Eucalyptus grandis] |
EMBL | CAN64889.1 | 0 | 8 | 687 | 14 | 710 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_180468.1 | 0 | 1 | 707 | 1 | 720 | exostosin family protein [Arabidopsis thaliana] |
RefSeq | XP_002280815.1 | 0 | 269 | 706 | 86 | 523 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002313430.1 | 0 | 256 | 706 | 120 | 569 | glycosyltransferase, CAZy family GT47 [Populus trichocarpa] |