Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 37576.m000020 |
Family | GH28 |
Protein Properties | Length: 194 Molecular Weight: 20877.4 Isoelectric Point: 5.978 |
Chromosome | Chromosome/Scaffold: 37576 Start: 338 End: 921 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 1 | 118 | 1.5e-28 |
MSIGSETNGGVRRVLVDDLSMDGTTSGLRIKSDVSRGGVVDQISYRNVCLRDVKTPIDISTRYARDAQGSLVPVFTNIGFDDVHSVSPGRLVIQGYDEQR PVQARLRDVSIAGKADRK |
Full Sequence |
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Protein Sequence Length: 194 Download |
MSIGSETNGG VRRVLVDDLS MDGTTSGLRI KSDVSRGGVV DQISYRNVCL RDVKTPIDIS 60 TRYARDAQGS LVPVFTNIGF DDVHSVSPGR LVIQGYDEQR PVQARLRDVS IAGKADRKIE 120 FARLTGEAIG SGDSSNCASR FVAFPDGTAA SARPQLSLDQ ARQFAYSEVL KYVGVAGKET 180 VDPWDPLNDP LAKA |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 0.008 | 2 | 63 | 63 | + polygalacturonase | ||
PLN02188 | PLN02188 | 0.0003 | 1 | 63 | 69 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 3.0e-5 | 1 | 87 | 97 | + Probable polygalacturonase | ||
COG5434 | PGU1 | 2.0e-11 | 2 | 62 | 61 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
pfam00295 | Glyco_hydro_28 | 1.0e-12 | 1 | 93 | 101 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_768633.1 | 3e-25 | 1 | 127 | 353 | 478 | polygalacturonase [Bradyrhizobium japonicum USDA 110] |
RefSeq | XP_002539941.1 | 0 | 1 | 194 | 1 | 194 | hypothetical protein RCOM_1971590 [Ricinus communis] |
RefSeq | YP_001691269.1 | 7e-25 | 1 | 153 | 285 | 449 | hypothetical protein M446_7020 [Methylobacterium sp. 4-46] |
RefSeq | YP_002755698.1 | 3e-29 | 1 | 149 | 293 | 462 | endo-polygalacturonase/pectinesterase [Acidobacterium capsulatum ATCC 51196] |
RefSeq | YP_003519390.1 | 4e-26 | 1 | 126 | 282 | 406 | Peh [Pantoea ananatis LMG 20103] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-24 | 1 | 120 | 253 | 370 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 3jur_D | 0.001 | 1 | 129 | 299 | 429 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.001 | 1 | 129 | 299 | 429 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.001 | 1 | 129 | 299 | 429 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.001 | 1 | 129 | 299 | 429 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FG172511 | 148 | 1 | 139 | 0.00000000004 |
FG166501 | 148 | 1 | 139 | 0.00000000006 |
EB449624 | 148 | 1 | 139 | 0.00000000007 |
DT583509 | 148 | 1 | 139 | 0.0000000001 |
FF547184 | 148 | 1 | 139 | 0.0000000001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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