Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 39176.m000013 |
Family | GH28 |
Protein Properties | Length: 197 Molecular Weight: 21706.7 Isoelectric Point: 6.9395 |
Chromosome | Chromosome/Scaffold: 39176 Start: 53 End: 646 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 185 | 5.5e-36 |
SQNVLIEDCVFDQGDDAISVKSGRDQDAWRLGVPSKNIVMRNCRIRNGHQLMAIGSELSAGIENVFVDNCHFDHSGSAVRSTINNLLFVKTNERRGGYVR NIHLSNVSATSIAGGVLCVDTDVLYQWRHLVPTYERRLTPIEGLHVSNVVVGEAGFMCQIKGEATLPVRDVSMRDIQVKTVHGK |
Full Sequence |
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Protein Sequence Length: 197 Download |
MSQNVLIEDC VFDQGDDAIS VKSGRDQDAW RLGVPSKNIV MRNCRIRNGH QLMAIGSELS 60 AGIENVFVDN CHFDHSGSAV RSTINNLLFV KTNERRGGYV RNIHLSNVSA TSIAGGVLCV 120 DTDVLYQWRH LVPTYERRLT PIEGLHVSNV VVGEAGFMCQ IKGEATLPVR DVSMRDIQVK 180 TVHGKPVSIE HAEGIVI |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 0.0001 | 2 | 194 | 199 | + polygalacturonase | ||
PLN03003 | PLN03003 | 8.0e-8 | 2 | 181 | 190 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-10 | 2 | 123 | 126 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-25 | 2 | 127 | 126 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002540267.1 | 0 | 1 | 197 | 1 | 197 | hypothetical protein RCOM_1982630 [Ricinus communis] |
RefSeq | YP_003086686.1 | 0 | 1 | 191 | 264 | 455 | glycoside hydrolase family 28 [Dyadobacter fermentans DSM 18053] |
RefSeq | ZP_01059955.1 | 0 | 1 | 196 | 260 | 450 | hypothetical protein MED217_05307 [Leeuwenhoekiella blandensis MED217] |
RefSeq | ZP_04770372.1 | 0 | 1 | 196 | 265 | 463 | glycoside hydrolase family 28 [Asticcacaulis excentricus CB 48] |
RefSeq | ZP_04847481.1 | 0 | 1 | 196 | 264 | 451 | pectate lyase [Bacteroides sp. 1_1_6] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-17 | 5 | 189 | 249 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-17 | 5 | 189 | 249 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-17 | 5 | 189 | 249 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-17 | 5 | 189 | 249 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.00002 | 2 | 123 | 388 | 500 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES913671 | 185 | 3 | 185 | 6e-21 |
FD946849 | 182 | 3 | 177 | 8e-21 |
GR141647 | 185 | 3 | 185 | 1e-20 |
EX126330 | 179 | 3 | 179 | 2e-20 |
FF585893 | 186 | 3 | 185 | 3e-20 |
Sequence Alignments (This image is cropped. Click for full image.) |
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