| Basic Information | |
|---|---|
| Species | Selaginella moellendorffii |
| Cazyme ID | 405348 |
| Family | GH28 |
| Protein Properties | Length: 602 Molecular Weight: 66676.1 Isoelectric Point: 8.8984 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 50 | 344 | 0 |
| WLAESAAKVWLEFVGVTDFTLIGGTYNGNGADWWAQSCKRNKTQGCSDGDAPTVSQAQIIDKFPLCLRRRVSGLAVARTSRSMAPPFGTPPQIHLTFSKS DVKSDVVEAVNVVIDSPGDSPNTDGIHVSGTTNIVIDKADVSAGDDCVSIVSGSDNVKVTNSRCGPGHGISIGSLGKGGSFDTVTNVLVQGIKIWRSHGV RISTVISLLLLLNCEQPGTRLQNYCNGAQNCQNQGTSLEISNITFSNIRGTSASPYGISLQCASATTYTDIRFRDVELTLANPGTPAGSVCSHVA | |||
| Full Sequence |
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| Protein Sequence Length: 602 Download |
| MASNRASITI LYMTGRYYLT PIVFEKCSNV TNAGQWLKRI LKFGWPEARW LAESAAKVWL 60 EFVGVTDFTL IGGTYNGNGA DWWAQSCKRN KTQGCSDGDA PTVSQAQIID KFPLCLRRRV 120 SGLAVARTSR SMAPPFGTPP QIHLTFSKSD VKSDVVEAVN VVIDSPGDSP NTDGIHVSGT 180 TNIVIDKADV SAGDDCVSIV SGSDNVKVTN SRCGPGHGIS IGSLGKGGSF DTVTNVLVQG 240 IKIWRSHGVR ISTVISLLLL LNCEQPGTRL QNYCNGAQNC QNQGTSLEIS NITFSNIRGT 300 SASPYGISLQ CASATTYTDI RFRDVELTLA NPGTPAGSVC SHVAGYSLEC METFDEWVRS 360 NRIFDEKVRG QLKIAPKVKQ ELGFSDGLNR QEANPSDSLS KISKVEQSKR CKRRPSVGAT 420 AERGKMIKTP KQEFIIESPS DLGKQDAKLL PIQIVLPRTL RRHLQDHKDR IENLQLTRLP 480 KKPSVEDILK LYQDHRMLKR GKAERIDVEV SNGLRYYFDR TLKNLLLYPA ERKQYATLLS 540 LNSDVVPSTI YGAEHLLRLF PKLPELLVYD QLKEKEVSEL EDKVREIMLF IERNESQFLC 600 A* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02188 | PLN02188 | 1.0e-28 | 7 | 343 | 357 | + polygalacturonase/glycoside hydrolase family protein |
| PLN02155 | PLN02155 | 5.0e-33 | 59 | 348 | 303 | + polygalacturonase |
| PLN02218 | PLN02218 | 2.0e-34 | 59 | 312 | 274 | + polygalacturonase ADPG |
| pfam00295 | Glyco_hydro_28 | 1.0e-39 | 59 | 343 | 298 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02793 | PLN02793 | 8.0e-40 | 59 | 347 | 302 | + Probable polygalacturonase |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF21207.1 | 8.40779e-45 | 59 | 343 | 151 | 425 | AC013483_31 putative polygalacturonase [Arabidopsis thaliana] |
| EMBL | CBI24904.1 | 0 | 59 | 343 | 168 | 442 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_187454.2 | 8.40779e-45 | 59 | 343 | 152 | 426 | QRT2 (QUARTET 2); polygalacturonase [Arabidopsis thaliana] |
| RefSeq | XP_002274775.1 | 0 | 59 | 343 | 161 | 435 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002313308.1 | 0 | 2 | 343 | 36 | 363 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2lkm_B | 1e-17 | 452 | 601 | 5 | 157 | B Chain B, Structural Basis For Molecular Interactions Involving Mrg Domains: Implications In Chromatin Biol |
| PDB | 2aql_B | 3e-17 | 452 | 601 | 6 | 158 | A Chain A, Crystal Structure Of The Mrg15 Mrg Domain |
| PDB | 2aql_A | 3e-17 | 452 | 601 | 6 | 158 | A Chain A, Crystal Structure Of The Mrg15 Mrg Domain |
| PDB | 2f5j_B | 4e-17 | 452 | 601 | 6 | 158 | A Chain A, Crystal Structure Of Mrg Domain From Human Mrg15 |
| PDB | 2f5j_A | 4e-17 | 452 | 601 | 6 | 158 | A Chain A, Crystal Structure Of Mrg Domain From Human Mrg15 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FS942787 | 304 | 57 | 346 | 4e-34 |
| FS942787 | 304 | 57 | 346 | 4e-34 |
| EX340593 | 294 | 72 | 345 | 9e-29 |
| EX340593 | 294 | 72 | 345 | 9e-29 |
| EE091344 | 269 | 74 | 330 | 2e-28 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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