y
Basic Information | |
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Species | Selaginella moellendorffii |
Cazyme ID | 407495 |
Family | PL1 |
Protein Properties | Length: 421 Molecular Weight: 45832.5 Isoelectric Point: 7.0241 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 137 | 337 | 0 |
EPLWIIFERDMSIRLSQELIVNSYKTIDGRGANVEIAHGPCITIQYVSHVIVHGIAVHDCKPGGPAMVRSSTTHFGWRTVSDGDGISIFGSNNIWVDHCT LARCTDGLIDAIMASTDITISNNHFSDHDKVMLLGHNDDYTADRAMQVTVAYNHFGQGLVERMPRCRHGYFHVVNNDYTEWRMYAIGGSANPTINAEGNR F |
Full Sequence |
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Protein Sequence Length: 421 Download |
MDRPARVLLL VLACCCASLF FSLAAASRAL KDHRHQGFNA SASASGAIDN PRGNGTQRRE 60 AFSLLGCGSS GNPIDDCWRC DPNWHNNRKR LAECAIGFGR NAIGGKNGEI YVVTDSSDDD 120 PVNPKPGTLR YGVIQSEPLW IIFERDMSIR LSQELIVNSY KTIDGRGANV EIAHGPCITI 180 QYVSHVIVHG IAVHDCKPGG PAMVRSSTTH FGWRTVSDGD GISIFGSNNI WVDHCTLARC 240 TDGLIDAIMA STDITISNNH FSDHDKVMLL GHNDDYTADR AMQVTVAYNH FGQGLVERMP 300 RCRHGYFHVV NNDYTEWRMY AIGGSANPTI NAEGNRFFAG FNENSKEITK REYTEQSIWK 360 SWNWRSEGNL FMNGAYFITS GAGSGSVYGK ASSLAAKPAA YVGELTLSAG ALLCGIGFPC 420 * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-25 | 104 | 337 | 252 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 9.0e-67 | 153 | 337 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-78 | 146 | 340 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK66161.1 | 0 | 54 | 420 | 4 | 368 | pectate lyase [Fragaria x ananassa] |
EMBL | CAB36835.1 | 0 | 54 | 420 | 10 | 374 | putative pectate lyase A11 (fragment) [Arabidopsis thaliana] |
GenBank | EEE60442.1 | 0 | 23 | 420 | 38 | 443 | hypothetical protein OsJ_13660 [Oryza sativa Japonica Group] |
RefSeq | NP_001141589.1 | 0 | 43 | 420 | 81 | 466 | hypothetical protein LOC100273705 [Zea mays] |
RefSeq | NP_567409.1 | 0 | 22 | 420 | 48 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 72 | 412 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 72 | 412 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-17 | 149 | 341 | 32 | 249 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000001 | 155 | 337 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000001 | 144 | 314 | 135 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |