Basic Information | |
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Species | Selaginella moellendorffii |
Cazyme ID | 413731 |
Family | CBM43 |
Protein Properties | Length: 708 Molecular Weight: 75596.1 Isoelectric Point: 7.0455 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 18 | 97 | 1.7e-26 |
WCIAQRRASLAQLQVALDWVCGPGQADCANIMAGQPCFLPDNSRGHASYAFNNYYLKNNKAYGSCNFSFLATVTTHDPTR |
Full Sequence |
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Protein Sequence Length: 708 Download |
MVPGALFQDA GAPPPPTWCI AQRRASLAQL QVALDWVCGP GQADCANIMA GQPCFLPDNS 60 RGHASYAFNN YYLKNNKAYG SCNFSFLATV TTHDPTRREW SACIHGGIPS ASIGAIDAIG 120 YLELKLSGLR GRSRAEEAGL RFPTQVQMEA LPVALEGRDC ILHAQTGSGK TLAYMLPILS 180 KISCQRSAVQ AIVVVPTREL GIQVAQVARL LGGGVVLEET DEIDTTKRTS VSVMTLLDGG 240 TSSRQKKWLR AAPPQLVIGT LFTVCRMIET GNLKLNAVST IVVDEVDTAV HKGTQILVSN 300 LLTKYSFAEK RQTIFASATV PQHNRFIHDC VQNKWTKPKI AHIYVRPEVK MPSNLSHRYV 360 ICGNEDKLSV LHATIMADAP KAAFVFANEQ SEKGKREGLV PRTRAMLDFF EHKKEEMPES 420 EASQWELLIL EECMNIHARF ANSRKLKDSK FLLFATDLAA RGLDVPEVTH VYNLELPSST 480 VAYIHRAGRT ARKPLEDEQC VVTTLARVAI LALERQREEF HPSRAILHAT AKWMPELDLK 540 LAVLVRGGTS SSGSGVPAGE GANLRDGREK AGGGERGAKV EDDGRRGGTP FAVVVESSSL 600 GWVDDPGAGA LAFAGNDEDP SGARAGASKL TSSCPDDSAT AASELDGVVG DDDLGLGGMG 660 FGFGSPGRGT KRGCGGVRAV PPGAVLPDCA GTVLPDCPGA VLPDPGD* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
smart00487 | DEXDc | 3.0e-31 | 136 | 327 | 193 | + DEAD-like helicases superfamily. | ||
PRK11776 | PRK11776 | 1.0e-33 | 144 | 492 | 358 | + ATP-dependent RNA helicase DbpA; Provisional | ||
cd00268 | DEADc | 1.0e-34 | 136 | 322 | 190 | + DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. | ||
pfam00270 | DEAD | 1.0e-36 | 144 | 322 | 180 | + DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. | ||
COG0513 | SrmB | 2.0e-54 | 136 | 492 | 378 | + Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG34873.1 | 0 | 134 | 508 | 81 | 444 | AF261020_1 putative chloroplast RNA helicase VDL isoform 1 [Nicotiana tabacum] |
Swiss-Prot | Q0JFN7 | 0 | 134 | 505 | 55 | 405 | RH58_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 58, chloroplastic; Flags: Precursor |
RefSeq | XP_001778480.1 | 0 | 134 | 505 | 19 | 387 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002277780.1 | 0 | 134 | 505 | 93 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002517195.1 | 0 | 134 | 505 | 98 | 451 | dead box ATP-dependent RNA helicase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1s2m_A | 2e-24 | 137 | 492 | 38 | 351 | A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p |
PDB | 2i4i_A | 2e-23 | 143 | 492 | 38 | 369 | A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x |
PDB | 2j0u_B | 2e-22 | 115 | 492 | 2 | 333 | T Chain T, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution |
PDB | 2db3_D | 3e-22 | 137 | 492 | 73 | 393 | A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa |
PDB | 2db3_C | 3e-22 | 137 | 492 | 73 | 393 | A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE469085 | 206 | 285 | 490 | 0 |
FE469085 | 65 | 221 | 285 | 0 |
FE486530 | 242 | 113 | 350 | 0 |
EX351683 | 294 | 139 | 430 | 0 |
EH732177 | 280 | 228 | 505 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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