Basic Information | |
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Species | Selaginella moellendorffii |
Cazyme ID | 413794 |
Family | PL4 |
Protein Properties | Length: 562 Molecular Weight: 63655.6 Isoelectric Point: 6.078 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 9 | 293 | 0 |
VVLEDNSSYVVISNGFLELTLTNPGGDVTRISYGGITDLLEWRNKETNRGYWNLVWSLPDGGDKFDVISGTKFTVVSNTEDMVELSFYRPYDSTETMVPL NIDKRFVVLRGRSGFYTYAIFDRPYGWSDFNLNVVRVAWKLGQDNFDFMAISDTKQRVMPYPQDRYPQNSETLAYKEAVDDKYQYSGENRSTKVHGWISF DPLVGFWMITPSYEFKTGGPLKQNLLSHTGPTCLSVFLGSHYGGITLCPKFRDGEAWKKVFGPVFVYLNSSSTDHRSLWEDAKLQ | |||
PL4 | 293 | 533 | 0 |
QGYQFWTQADKFGNFEISNVLPGTYDLYGWVPGVIGDYKKQGDSITISQGGSYDLGSLVYKPPRNGPTLWEIGFPDRSAAGFFVPSPDSKYVSKLFVYQE RFRQYGLWTRYSEIYSSQDLVYTVGSSQWPKDWFFIHGVRVKSDGSFEPTTWEIKFWLDLAIKDESYTLRIAIAGSHYGNIKVYVNSLSSSPCFVTGMFG RDNAIARHGIHGLYRLYSVDINGGLLKRGDNSIYLTQANSR |
Full Sequence |
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Protein Sequence Length: 562 Download |
MSSASLPPVV LEDNSSYVVI SNGFLELTLT NPGGDVTRIS YGGITDLLEW RNKETNRGYW 60 NLVWSLPDGG DKFDVISGTK FTVVSNTEDM VELSFYRPYD STETMVPLNI DKRFVVLRGR 120 SGFYTYAIFD RPYGWSDFNL NVVRVAWKLG QDNFDFMAIS DTKQRVMPYP QDRYPQNSET 180 LAYKEAVDDK YQYSGENRST KVHGWISFDP LVGFWMITPS YEFKTGGPLK QNLLSHTGPT 240 CLSVFLGSHY GGITLCPKFR DGEAWKKVFG PVFVYLNSSS TDHRSLWEDA KLQGYQFWTQ 300 ADKFGNFEIS NVLPGTYDLY GWVPGVIGDY KKQGDSITIS QGGSYDLGSL VYKPPRNGPT 360 LWEIGFPDRS AAGFFVPSPD SKYVSKLFVY QERFRQYGLW TRYSEIYSSQ DLVYTVGSSQ 420 WPKDWFFIHG VRVKSDGSFE PTTWEIKFWL DLAIKDESYT LRIAIAGSHY GNIKVYVNSL 480 SSSPCFVTGM FGRDNAIARH GIHGLYRLYS VDINGGLLKR GDNSIYLTQA NSRSPFVGVL 540 YDHIRFEAPC CEIIEEASSS L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 4.0e-17 | 271 | 350 | 80 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 6.0e-40 | 362 | 547 | 188 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 4.0e-65 | 8 | 187 | 181 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10320 | RGL4_N | 1.0e-70 | 9 | 285 | 288 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3njx_A | 0.0006 | 216 | 555 | 174 | 508 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 3njv_A | 0.001 | 216 | 555 | 174 | 508 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 2xhn_B | 0.001 | 216 | 555 | 174 | 508 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 2xhn_A | 0.001 | 216 | 555 | 174 | 508 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 1nkg_A | 0.001 | 216 | 555 | 174 | 508 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
Sequence Alignments (This image is cropped. Click for full image.) |
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