| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 470192 |
| Family | GH5 |
| Protein Properties | Length: 411 Molecular Weight: 46253.5 Isoelectric Point: 6.6797 |
| Chromosome | Chromosome/Scaffold: 1 Start: 580593 End: 583503 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 40 | 365 | 5e-33 |
| NGEQVYLNGFNAYWMMTTAADTAAKGRGIVTTALRQASAVGMNVARIWGFNEGDYIPLQISPGSYSEDVFKGLDFVVYEAGRFKIKLIISLVNNYEDYGG RKKYVEWAGLDEPDEFYTNSAVKQFYKNHVKTVLTRKNTITGRMYKDDPTIFSWELINEPRCNVTGSNILQNWVKEMASYVKSIDSIHLLEIGLEGFYGD SIPERTVYNPGGRVLTGTDFISNNQIPDIDFATIHIYPDSWLPLQSSRTGEQDTFVDRWIGSHIEDCNNIIMKPLLITEFGKSSKYPGFSLEKRNKFFKR VYDVIYDSARTGGSCTGGVFWQLTTN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 411 Download |
| MLNILLFFFF FLPFLIGNNR ICVAANTGFV GRNGTQFVLN GEQVYLNGFN AYWMMTTAAD 60 TAAKGRGIVT TALRQASAVG MNVARIWGFN EGDYIPLQIS PGSYSEDVFK GLDFVVYEAG 120 RFKIKLIISL VNNYEDYGGR KKYVEWAGLD EPDEFYTNSA VKQFYKNHVK TVLTRKNTIT 180 GRMYKDDPTI FSWELINEPR CNVTGSNILQ NWVKEMASYV KSIDSIHLLE IGLEGFYGDS 240 IPERTVYNPG GRVLTGTDFI SNNQIPDIDF ATIHIYPDSW LPLQSSRTGE QDTFVDRWIG 300 SHIEDCNNII MKPLLITEFG KSSKYPGFSL EKRNKFFKRV YDVIYDSART GGSCTGGVFW 360 QLTTNRTGLL GDGYEVFMQA GPNTTAQLIA EQSSKLRNLK YPPLVTHSAE * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG2730 | BglC | 0.008 | 80 | 292 | 232 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
| pfam00150 | Cellulase | 0.004 | 40 | 324 | 296 | + Cellulase (glycosyl hydrolase family 5). | ||
| COG3934 | COG3934 | 3.0e-25 | 37 | 326 | 293 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABG88068.1 | 0 | 1 | 399 | 7 | 409 | endo-1,4-beta-mannanase [Glycine max] |
| EMBL | CAC08442.1 | 0 | 30 | 399 | 45 | 415 | (1-4)-beta-mannan endohydrolase [Coffea arabica] |
| RefSeq | NP_171733.2 | 0 | 1 | 410 | 1 | 411 | glycosyl hydrolase family protein 5 / cellulase family protein / (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002302695.1 | 0 | 7 | 398 | 7 | 402 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515142.1 | 0 | 1 | 399 | 9 | 403 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 25 | 399 | 2 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 0 | 38 | 363 | 21 | 343 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 0 | 38 | 363 | 21 | 343 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 0 | 38 | 363 | 21 | 343 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 0 | 38 | 363 | 21 | 343 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
